View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_low_13 (Length: 428)
Name: NF11916_low_13
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 31662304 - 31662705
Alignment:
| Q |
13 |
agatgggaaggtgcaaatttagaaggttcataaattagagaatcttccagactttatcactaaagtggttcccttaggaaagtttaggcactgcttaaat |
112 |
Q |
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| T |
31662304 |
agatgggaaggtgcaaatttagaaggttcataaattagagaatcttccagactttatcactaaagtggttcccttaggaaagtttaggcactgcttaaat |
31662403 |
T |
|
| Q |
113 |
tttctgaagattgaagatggttgagttgtttggacttgaataacacactttagttttgaaggttgacacaaaattccattttagattaatgagtaatgct |
212 |
Q |
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| T |
31662404 |
tttctgaagattgaagatggttgagttgtttggacttgaataacacactttagttttgaaggttgatacaaaattccattttagattaatgagtaatgct |
31662503 |
T |
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| Q |
213 |
gtataaataggaattcatcagtattatattaaaaatgtgcattgtaaaggttaacttgaaagcatgtttgttattaaatcatacgttgatttgaagtgat |
312 |
Q |
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| T |
31662504 |
gtataaataggaattgatcagtattatattaaaaatgtgcattgtaaaggttaacttgaaagcatgtttgttattaaatcatacgttgatttgaagtgat |
31662603 |
T |
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| Q |
313 |
gtaattgatatttcaatttttgctgtt-cagttttgttcatggtaggttatcatatgagaacttgaaaacaaacatatatcttttatgaccaaatggaag |
411 |
Q |
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| T |
31662604 |
gtaattgatatttcaatttttgctgttacagttttgttcatggtaggttatcatatgagaacttgaaaacaaac--atatcttttatgaccaaatggaag |
31662701 |
T |
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| Q |
412 |
aagt |
415 |
Q |
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|||| |
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| T |
31662702 |
aagt |
31662705 |
T |
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