View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_low_19 (Length: 370)
Name: NF11916_low_19
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 31935612 - 31935953
Alignment:
| Q |
13 |
agaaggacaaaatgtgatagtataatcatccgcagcagtacaagtaaaagtactcgtagcatcatcaaacgcatagctataagatttaggacaagcagat |
112 |
Q |
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| T |
31935612 |
agaaggacaaaatgtgatagtataatcatccgcagcagtacaagtaaaagtactcgtagcatcatcaaacgcatagctataagatttaggacaagcagat |
31935711 |
T |
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| Q |
113 |
ttaaacatttccgaataaaccgaaggcgaacaactcgatggcgaaccaaacgcgccactacaacaatactccggtgtcccaaacgcaccacacgcgctat |
212 |
Q |
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| T |
31935712 |
ttaaacatttccgaataaaccgaaggcgaacaactcgatggcgaaccaaacgcgccactacaacaatactccggtgtcccaaacgcgccacacgcgctat |
31935811 |
T |
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| Q |
213 |
tacacgcgtcaccaccgtccacactcagctccgagggacacctccggttaagatcctctccacatccagtgggctgacatgaacctgaaccgccactagt |
312 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31935812 |
tacacgcgtcaccaccgtccactctcagctccgagggacacctccggttaagatcctctccacatccagtggcctgacatgaacctgaaccgccactagt |
31935911 |
T |
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| Q |
313 |
ttcaaccatcaccggaagattgtaaccgtctacgagactaac |
354 |
Q |
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| T |
31935912 |
ttcaaccatcaccggaagattgtaaccgtctacgagactaac |
31935953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 27975359 - 27975539
Alignment:
| Q |
40 |
atccgcagcagtacaagtaaaagtactcgtagcatcatcaaacgcatagctataagatttaggacaagcagatttaaacatttccgaataaaccgaaggc |
139 |
Q |
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| T |
27975359 |
atccgcagcagtacaagtaaaagtactcgaagcatcatcataagcgtagctatacgatctagggcaagcatttttaaacatttccgagtaaatcgacggt |
27975458 |
T |
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| Q |
140 |
gaacaactcgatggcgaaccaaacgcgccactacaacaatactccggtgtcccaaacgcaccacacgcgctattacacgcg |
220 |
Q |
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| T |
27975459 |
ctacaagtcgccggtgaaccatacgcgccactacaacaatactcaggactaccaaaagcctcacacgcgctcttacacgcg |
27975539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 8810782 - 8810723
Alignment:
| Q |
160 |
aaacgcgccactacaacaatactccggtgtcccaaacgcaccacacgcgctattacacgc |
219 |
Q |
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||||||||| |||||||||| |||||| |||||||||| ||||| || ||||||||||| |
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| T |
8810782 |
aaacgcgccgttacaacaatattccggtttcccaaacgcgccacaagcactattacacgc |
8810723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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