View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_low_20 (Length: 343)
Name: NF11916_low_20
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 35851137 - 35850814
Alignment:
| Q |
1 |
agaaagaaactgtaaccgttgaattgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35851137 |
agaaagaaactgtaaccgttgaattgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagt |
35851038 |
T |
|
| Q |
101 |
tttgagttacaaaatcggtttatacagagtcgactacgagaacggtgattttgaggatttggatagtagtgctattcgtagaattctcattgaggattgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35851037 |
tttgagttacaaaatcggtttatacagagtcgactacgagaacggtgattttgaggatttggatagtagtgctattcgtagaattctcattgaggattgc |
35850938 |
T |
|
| Q |
201 |
gattttgacgatgatttgattcgacggaagaatgaattggatcaatcgttgttgaataagattattgaagaatcgagtgaattgaatgtggaagatcaag |
300 |
Q |
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| T |
35850937 |
gattttgacgacgatttgattcgacggaagaatgaattggatcaatcgttgttgaataagattattgaagaatcgagtgaattgaatgtggaagatcaag |
35850838 |
T |
|
| Q |
301 |
aggaatcacaagatgtgatggacg |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
35850837 |
aggaatcacaagatgtgatggacg |
35850814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 324
Target Start/End: Complemental strand, 35841516 - 35841197
Alignment:
| Q |
2 |
gaaagaaactgtaaccgttgaattgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagtt |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
35841516 |
gaaagaaactgtaaccgttgaattgaagaagccgattgtattgattggacgatgtgttttgaaagagttttcagaaaccgtt---caaatcggaaaagtt |
35841420 |
T |
|
| Q |
102 |
ttgagttacaaaatcggtttatacagagtcgactacgagaacggtgattttgaggatttggatagtagtgctattcgtagaattctcattgaggattgcg |
201 |
Q |
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||||||| |||||||||| |||||||| || || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35841419 |
atgagttatgaaatcggtttttacagagtggagtatgagaacggtgtttttgaggatttggatagtagcgctattcgtagaattctcattgaggattgcg |
35841320 |
T |
|
| Q |
202 |
attttgacgatgatttgattcgacggaagaatgaattggatcaatcgttgttgaataagattattgaagaatcgagtgaattgaatgtggaagatcaaga |
301 |
Q |
| |
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|||| |||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |
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| T |
35841319 |
atttcgacgatgatttgattcgaagaaagaatgaattggaacaatcgttgttgaataagattattgaagaatctagagaattgaatgcggaagatcaaga |
35841220 |
T |
|
| Q |
302 |
ggaatcacaagatgtgatggacg |
324 |
Q |
| |
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||| |||| |||||| ||||||| |
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| T |
35841219 |
ggattcacgagatgttatggacg |
35841197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 13314058 - 13314307
Alignment:
| Q |
1 |
agaaagaaactgtaaccgttgaattgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagt |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||| ||||||| |||||| |
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| T |
13314058 |
agaaagaaactgtaaccgttgaaatgaagaagccgattgtgttgattggacgatagattttgaaagagttttcaaaaagcgttgtccaaatcgaaaaagt |
13314157 |
T |
|
| Q |
101 |
tttgagttacaaaatcggtttatacagagtcgactacgagaacggtgattttgaggatttggatagtagtgctattcgtagaattctcattgaggattgc |
200 |
Q |
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||||| ||| ||||| ||||||||||||||||| | ||||| | || ||||||||| |||||||||| || ||||| || ||||||||| ||||||||| |
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| T |
13314158 |
tttgatttataaaattggtttatacagagtcgagtttgagaatgatgtttttgaggaattggatagtaatgttattcctataattctcatcgaggattgc |
13314257 |
T |
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| Q |
201 |
gattttgacgatgatttgattcgacggaagaatgaattggatcaatcgtt |
250 |
Q |
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||||||| | ||||| |||||||| ||||||||||||||||||||||| |
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| T |
13314258 |
aattttgattaagatttaattcgacgaaagaatgaattggatcaatcgtt |
13314307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13313636 - 13313413
Alignment:
| Q |
1 |
agaaagaaactgtaaccgttgaattgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagt |
100 |
Q |
| |
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|||||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| |
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| T |
13313636 |
agaaagaaactggaaccgttgaaatgaataagccgattgtattgattggacgatacgttttgaaagagttttcagaattcgttgttcaaattggaaaagt |
13313537 |
T |
|
| Q |
101 |
tttgagttacaaaatcggtttatacagagtcgactacgagaacggtgattttgaggatttggatagtagtgctattcgtagaattctcattgaggattgc |
200 |
Q |
| |
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| ||||| | ||||||||||||||||||||||| | |||||| ||| ||||||| | |||||||||| || ||| |||||||||||||| |||||||| |
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| T |
13313536 |
tgtgagtcataaaatcggtttatacagagtcgagtttgagaacagtgtttttgagaaattggatagtattgttatccgtagaattctcatcaaggattgc |
13313437 |
T |
|
| Q |
201 |
gattttgacgatgatttgattcga |
224 |
Q |
| |
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|||||||| |||||||||||||| |
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| T |
13313436 |
aattttgactatgatttgattcga |
13313413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 13301051 - 13300924
Alignment:
| Q |
36 |
attgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttatacagagtcgact |
135 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||| |||||||| ||||||||||||||| |||||||| |||||| | |
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| T |
13301051 |
attgtattgattggacgatacgttttgaaagagtttt-agaaagcattgttcaaatcagaaaagttatgagttacaaaatcgatttatacaaagtcgagt |
13300953 |
T |
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| Q |
136 |
acgagaacggtgattttgaggatttggat |
164 |
Q |
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|||||||||| ||||||||| |||||| |
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| T |
13300952 |
ttgagaacggtgtttttgaggaattggat |
13300924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 13305578 - 13305675
Alignment:
| Q |
31 |
agcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttatacaga |
128 |
Q |
| |
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|||| |||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||| |||||||| ||||||| |||||||||||| ||||| |
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| T |
13305578 |
agccgattgtattgattggccgatatgttttgaaagagttttcagaaagcgttgttcaaatcagaaaagttgtgagttataaaatcggtttacacaga |
13305675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 13305536 - 13305377
Alignment:
| Q |
36 |
attgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttatacagagtcgact |
135 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||||||| | ||||||||||||| || ||||||| ||||| ||||||| ||||| || | |
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| T |
13305536 |
attgtattggttggacgatgtgttttgaaagagttttcagaaag------tcaaatcggaaaaattatgagttataaaattggtttatgcagag--gagt |
13305445 |
T |
|
| Q |
136 |
acgagaacggtgattttgaggatttggatagtagtgctattcgtagaattctcattgaggattgcgattt |
205 |
Q |
| |
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|||||||||| ||||||||| | |||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
13305444 |
ttgagaacggtgtttttgaggaaattgatagtagtgctattcgtagaattctca--gaggattgcaattt |
13305377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 13305673 - 13305739
Alignment:
| Q |
139 |
agaacggtgattttgaggatttggatagtagtgctattcgtagaattctcattgaggattgcgattt |
205 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| ||||||| |||| |||| ||| ||||| |||| |
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| T |
13305673 |
agaacggtgtttttgaggaattggatagtagtgttattcgtcaaattatcatcgagtattgcaattt |
13305739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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