View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11916_low_24 (Length: 286)

Name: NF11916_low_24
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11916_low_24
NF11916_low_24
[»] chr4 (4 HSPs)
chr4 (1-270)||(23588165-23588434)
chr4 (1-270)||(23597017-23597286)
chr4 (3-270)||(54395890-54396157)
chr4 (36-93)||(9336358-9336415)
[»] chr7 (7 HSPs)
chr7 (1-268)||(8102136-8102403)
chr7 (1-268)||(8017845-8018112)
chr7 (1-184)||(39985199-39985382)
chr7 (27-93)||(8575970-8576036)
chr7 (36-93)||(10494841-10494898)
chr7 (36-93)||(13333835-13333892)
chr7 (18-82)||(8636792-8636856)
[»] chr2 (5 HSPs)
chr2 (6-93)||(16662429-16662516)
chr2 (36-93)||(16657984-16658041)
chr2 (33-92)||(43625057-43625116)
chr2 (3-64)||(17717121-17717182)
chr2 (9-93)||(11999052-11999136)
[»] chr1 (2 HSPs)
chr1 (30-91)||(4679018-4679079)
chr1 (32-93)||(15594678-15594739)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 23588165 - 23588434
Alignment:
Q  1 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23588165 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 23588264  T
Q  101 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23588265 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaac 23588364  T
Q  201 acaaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgattc 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23588365 acaaccattcctaccaagaaggagcaagtgttttcaacctactctgataatcaacctggtgtgttgattc 23588434  T

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Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 23597017 - 23597286
Alignment:
Q  1 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 100  Q
    |||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||||||| || || ||    
T  23597017 aagatttcttcaatgggaaggaactttgtaagagcatcaaccctgatgaggctgttgcttatggcgctgcagtccaagctgctattttgagcggcgaagg 23597116  T
Q  101 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaac 200  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||    
T  23597117 caatgagaaagtacaggatcttttgttgctggatgttactcctctttcccttggtttggagactgcaggaggagtcatgactgtgttaattccgagaaac 23597216  T
Q  201 acaaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgattc 270  Q
    ||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||    
T  23597217 acaacaattcctaccaagaaggagcaggtgttttcgacctattctgataaccaacctggtgtgctgattc 23597286  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 270
Target Start/End: Complemental strand, 54396157 - 54395890
Alignment:
Q  3 gatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgagggca 102  Q
    |||||||||||||| || |||||||| ||||| || ||||| |||||||||||||| ||||| || || || ||||| || |||||||| ||||| ||      
T  54396157 gatttcttcaatgggaaagagctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgagcggtgaaggtg 54396058  T
Q  103 atgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaacac 202  Q
    |||| || || || |||||  ||||||| ||||||||||||||     | || ||||| || || || ||||| |||||    |||||||| || |||||    
T  54396057 atgaaaaggttcaagatcttctgttgcttgatgttactcctcttagtttggggttggaaactgctggtggtgttatgacgactttgattccaaggaacac 54395958  T
Q  203 aaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgattc 270  Q
     || |||||||| |||||||||||  | || ||||| ||||| ||||||||||||||||| |||||||    
T  54395957 gacgattcctacgaagaaggagcagattttctcaacttactcagataaccaacctggtgttttgattc 54395890  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 9336358 - 9336415
Alignment:
Q  36 atcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    |||||||| ||||| |||||||| ||||| ||||| || |||||||||||||||||||    
T  9336358 atcaacccagatgaggctgttgcttatggtgcagctgttcaagctgctattttgagtg 9336415  T

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Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 8102403 - 8102136
Alignment:
Q  1 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 100  Q
    |||| ||||||||||| |||||||| || || |||||||||||||| || |||||||| ||||| || || || ||||||||||| ||||||||||| ||    
T  8102403 aagacttcttcaatggtaaggagctatgcaaaagcatcaaccccgacgaggctgttgcttatggtgccgctgttcaagctgctatcttgagtggtgaagg 8102304  T
Q  101 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaac 200  Q
     |||||||| || || ||| ||||| |  ||||||| || ||  | || |  ||||||||||| ||||||||||||||||||||||||||||| || |||    
T  8102303 aaatgagaaggttcaagatttgttgcttttggatgtcaccccattgtctcaaggtttggagactgcaggaggtgtcatgactgtattgattccaaggaac 8102204  T
Q  201 acaaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgat 268  Q
    || |||||||| ||||||||||||||||| || || || || || || |||||||||||||| |||||    
T  8102203 actaccattccaaccaagaaggagcaagttttctctacgtattcagacaaccaacctggtgttttgat 8102136  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 8017845 - 8018112
Alignment:
Q  1 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 100  Q
    |||||||||||||||| || |||||||| ||||| |||||||| || || |||||||| ||||| || || || ||||| || |||||||||||||| ||    
T  8017845 aagatttcttcaatggtaaagagctttgcaagagtatcaacccagacgaggctgttgcttatggtgccgctgtacaagcagcaattttgagtggtgaagg 8017944  T
Q  101 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaac 200  Q
    |||||| || || || ||| || || |  ||||||| |||||  | || || ||| | || || || || ||||||||||||||||| ||||| || |||    
T  8017945 caatgaaaaggttcaagatttgctgcttttggatgtcactccattgtctctgggtctagaaactgctggtggtgtcatgactgtattaattccaaggaac 8018044  T
Q  201 acaaccattcctaccaagaaggagcaagtgttttcaacctactctgataaccaacctggtgtgttgat 268  Q
    || || ||||| ||||||||||||||||| || || || ||||| |||||||||||||||||||||||    
T  8018045 accacaattccaaccaagaaggagcaagttttctctacttactcagataaccaacctggtgtgttgat 8018112  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 39985382 - 39985199
Alignment:
Q  1 aagatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgaggg 100  Q
    |||||||||| || ||||||||||| || |||||||| || || ||||| |||||||||||||| || || || || |||||||| ||||||||||||||    
T  39985382 aagatttctttaacggaaaggagctatgcaagagcataaatcctgatgaggctgttgcatatggtgctgctgttcaggctgctatcttgagtggtgaggg 39985283  T
Q  101 caatgagaaagtgcaggatctgttgttgctggatgttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgt 184  Q
    ||||||||| || ||||||||  |  |  ||||||| || ||||| || |||||||||||||| || || ||||| ||||||||    
T  39985282 caatgagaaggttcaggatcttctccttttggatgtcacccctctatctcttggtttggagactgctggtggtgtgatgactgt 39985199  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 8576036 - 8575970
Alignment:
Q  27 tgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    ||||||||||||||||| ||||| |||||||| ||||| || |  |||||||||||| | |||||||    
T  8576036 tgtaagagcatcaaccctgatgaggctgttgcttatggtgctgttgtccaagctgctttgttgagtg 8575970  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 10494841 - 10494898
Alignment:
Q  36 atcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    |||||||| ||||| |||||||| ||||| ||||| || || ||||||||||||||||    
T  10494841 atcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtg 10494898  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 13333835 - 13333892
Alignment:
Q  36 atcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    |||||||| ||||| |||||||| ||||| ||||| || || ||||||||||||||||    
T  13333835 atcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtg 13333892  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 8636792 - 8636856
Alignment:
Q  18 aaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgc 82  Q
    ||||| || ||||||||||||||| | ||||| |||||||| ||||| ||||| ||||| |||||    
T  8636792 aaggaactgtgtaagagcatcaacgctgatgaggctgttgcttatggagcagcagtccaggctgc 8636856  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 16662429 - 16662516
Alignment:
Q  6 ttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    ||||||||||| |||||| | || |||||||||||||| ||||| |||||||| ||||||||||| || ||||||||| | |||||||    
T  16662429 ttcttcaatgggaaggagttgtgcaagagcatcaaccctgatgaggctgttgcttatggggcagctgtgcaagctgctgtgttgagtg 16662516  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 16657984 - 16658041
Alignment:
Q  36 atcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    |||||||| |||||||||||||| || || ||||| || |||||||||||||||||||    
T  16657984 atcaacccggatgaagctgttgcttacggtgcagctgttcaagctgctattttgagtg 16658041  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 43625116 - 43625057
Alignment:
Q  33 agcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagt 92  Q
    ||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||||    
T  43625116 agcataaaccctgatgaggctgttgcttatggtgcagctgtccaggctgctattttgagt 43625057  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 17717121 - 17717182
Alignment:
Q  3 gatttcttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatgg 64  Q
    |||||||| ||  |||||||||| || |||||||| || |||||||| ||||||||||||||    
T  17717121 gatttctttaacagaaaggagctatgcaagagcattaatcccgatgaggctgttgcatatgg 17717182  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 11999136 - 11999052
Alignment:
Q  9 ttcaatggaaaggagctttgtaagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    ||||| || |||||| | || |||||||| ||||| ||||| ||||| || ||||||||||| || ||||||||| | |||||||    
T  11999136 ttcaacgggaaggagttgtgcaagagcattaaccctgatgaggctgtagcttatggggcagctgttcaagctgctttgttgagtg 11999052  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 4679018 - 4679079
Alignment:
Q  30 aagagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgag 91  Q
    ||||| |||||||| ||||| |||||||| ||||| |||||  |||||||||||||||||||    
T  4679018 aagagtatcaacccagatgaggctgttgcttatggtgcagctatccaagctgctattttgag 4679079  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 15594739 - 15594678
Alignment:
Q  32 gagcatcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 93  Q
    |||||||||||| ||||| |||||||| ||||| ||||| ||||| |||||| | |||||||    
T  15594739 gagcatcaaccctgatgaggctgttgcttatggtgcagctgtccaggctgctttgttgagtg 15594678  T

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