View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_low_26 (Length: 275)
Name: NF11916_low_26
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 111 - 268
Target Start/End: Complemental strand, 6729529 - 6729372
Alignment:
| Q |
111 |
cagaacctgtgcttgaaccagtccttactcctatatccaacaccacactacctctaacccacacaaactcatcacctttcactggatctgcaacaacccc |
210 |
Q |
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| T |
6729529 |
cagaacctgtgcttgaaccaatccttactcctatatccaacaccacactacctctaacccacacaaactcatcacccttcactagatctgcaacaacccc |
6729430 |
T |
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| Q |
211 |
attctctacctcaacaaattttattcctttctctacactgttatcacttcatctcact |
268 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
6729429 |
attctctacctcaacaaattttattcttttctctacaccgttatcacttcatcacact |
6729372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9039026 - 9038960
Alignment:
| Q |
1 |
aagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaat |
67 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||| |
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| T |
9039026 |
aagaaatttctcctcgttcaaatctgtcactcccataatctcatcctttaaaaccaaccccacaaat |
9038960 |
T |
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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 9123305 - 9123410
Alignment:
| Q |
1 |
aagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9123305 |
aagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
9123404 |
T |
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| Q |
101 |
agtgaa |
106 |
Q |
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| |||| |
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| T |
9123405 |
aatgaa |
9123410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 9131412 - 9131517
Alignment:
| Q |
1 |
aagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9131412 |
aagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
9131511 |
T |
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| Q |
101 |
agtgaa |
106 |
Q |
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| |||| |
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| T |
9131512 |
aatgaa |
9131517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 24525173 - 24525278
Alignment:
| Q |
1 |
aagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
100 |
Q |
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|||||| |||||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525173 |
aagaaacttctcctcattcaaatcattcactcccataatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
24525272 |
T |
|
| Q |
101 |
agtgaa |
106 |
Q |
| |
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| |||| |
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|
| T |
24525273 |
aatgaa |
24525278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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