View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_low_28 (Length: 255)
Name: NF11916_low_28
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 44606534 - 44606783
Alignment:
| Q |
1 |
tcacttgatgttgaagtggttgaatacttcttgatcatttaactatagagacctaactgtttaactgttatttgactgtgtctaccagtgtaccgttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44606534 |
tcacttgatgttgaagtggttgaatacttcttgatcatttaactatagagacctaactgtttaactgttatttgactgtgtctaccagtgtaccgttttg |
44606633 |
T |
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| Q |
101 |
gaagtcaaggttattgaaggccatggaactactattgatgttgttttagttaatggtgttcttcatgaaggggatcaaatagttgtatctggaatgcagg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44606634 |
gaagtcaaggttatcgaaggccatggaactactattgatgttgttttagttaatggtgttcttcatgaaggggatcaaatagttgtatctggaatgcagg |
44606733 |
T |
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| Q |
201 |
caagcatctctgattataactacatctattaatacttgctctctgcttct |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44606734 |
caagcatctctgattataactacatctattaatacttgctttctgcttct |
44606783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 44628020 - 44628267
Alignment:
| Q |
1 |
tcacttgatgttgaagtggttgaatacttcttgatcatttaactatagagacctaactgtttaactgttatttgactgtgtctaccagtgtaccgttttg |
100 |
Q |
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|||||||||||| ||||||||||| ||| |||||| |||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
44628020 |
tcacttgatgtt--agtggttgaatgcttgttgatcgtttaacaatagagacctaactgtctaactgttatttgactgtggctaccagtgtaccgttttg |
44628117 |
T |
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| Q |
101 |
gaagtcaaggttattgaaggccatggaactactattgatgttgttttagttaatggtgttcttcatgaaggggatcaaatagttgtatctggaatgcagg |
200 |
Q |
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| T |
44628118 |
gaagtcaaggttattgaaggccatggaactactattgatgttgttttagttaatggtgttcttcatgaaggggatcaaatagttgtatctggaatgcagg |
44628217 |
T |
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| Q |
201 |
caagcatctctgattataactacatctattaatacttgctctctgcttct |
250 |
Q |
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|||||||||| || |||||| |||| |||||||||||||| ||||||||| |
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| T |
44628218 |
caagcatctcagactataaccacatgtattaatacttgctttctgcttct |
44628267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 69 - 246
Target Start/End: Original strand, 183241 - 183418
Alignment:
| Q |
69 |
tatttgactgtgtctaccagtgtaccgttttggaagtcaaggttattgaaggccatggaactactattgatgttgttttagttaatggtgttcttcatga |
168 |
Q |
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| T |
183241 |
tatttgactgtggttaccagtgtactgttttggaagtcaaggttattgaaggctatggaactactattaatgttgttttagttaatggtgttcttcatga |
183340 |
T |
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| Q |
169 |
aggggatcaaatagttgtatctggaatgcaggcaagcatctctgattataactacatctattaatacttgctctctgc |
246 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||| | || ||||||||||| || ||||||||| ||||| |
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| T |
183341 |
aggagatcaaatagttgtatctggaatgaaggcaagcatctcaggttctaactacatctgttcatacttgctttctgc |
183418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 29219700 - 29219551
Alignment:
| Q |
88 |
gtgtaccgttttggaagtcaaggttattgaaggccatggaactactattgatgttgttttagttaatggtgttcttcatgaaggggatcaaatagttgta |
187 |
Q |
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|||||| |||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
29219700 |
gtgtactgttttgcaagtcaaggttattgaaggctatggaactactactgatgttgttttagttaatggtgttcttcatgaaggtggtcaaatagttgta |
29219601 |
T |
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| Q |
188 |
tctggaatgcaggcaagcatctctgattataactacatctattaatactt |
237 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
29219600 |
tctggaatgcaggcaagcatctcaaattctaactacatctattaatactt |
29219551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 62 - 240
Target Start/End: Complemental strand, 591144 - 590966
Alignment:
| Q |
62 |
taactgttatttgactgtgtctaccagtgtaccgttttggaagtcaaggttattgaaggccatggaactactattgatgttgttttagttaatggtgttc |
161 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | | ||||||| |
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| T |
591144 |
taactgttatttgactgtggttaccagtgtactgttttggaagtcaaggttattgaaggctatggaactactatcgatgttgttttagctcaaggtgttc |
591045 |
T |
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| Q |
162 |
ttcatgaaggggatcaaatagttgtatctggaatgcaggcaagcatctctgattataactacatctattaatacttgct |
240 |
Q |
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||| | || |||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||| || ||||||||| |
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| T |
591044 |
ttcgtcgtggtgatcaaatagttgtgtctggaatgaaggcaagcatctcagattctaactacatctgttcatacttgct |
590966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 226
Target Start/End: Original strand, 41373253 - 41373413
Alignment:
| Q |
66 |
tgttatttgactgtgtctaccagtgtaccgttttggaagtcaaggttattgaaggccatggaactactattgatgttgttttagttaatggtgttcttca |
165 |
Q |
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||||||||| |||| |||||||||| ||||||| ||||| | | |||||| | |||||| ||| || ||||||||||||||||||||||||| || |
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| T |
41373253 |
tgttatttgtttgtggataccagtgtattattttggatgtcaatgattttgaagactgtggaaccactcttaatgttgttttagttaatggtgttctaca |
41373352 |
T |
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| Q |
166 |
tgaaggggatcaaatagttgtatctggaatgcaggcaagcatctctgattataactacatc |
226 |
Q |
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|||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||| |
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| T |
41373353 |
tgaaggagatcaaatagctgtatgtggaaggcaggcaagcatctctgattctaactgcatc |
41373413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 41062312 - 41062405
Alignment:
| Q |
87 |
agtgtaccgttttggaagtcaaggttattgaaggccatggaactactattgatgttgttttagttaatggtgttcttcatgaaggggatcaaat |
180 |
Q |
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||||||| |||||||| |||||| | || ||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
41062312 |
agtgtactgttttggatgtcaagctccttcaaggccatggaaccgctatcaatgttgttttagttaatggtgttcttcatgtaggagatcaaat |
41062405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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