View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_low_30 (Length: 244)
Name: NF11916_low_30
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 33116412 - 33116184
Alignment:
| Q |
1 |
actccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataagcgaaccaaacgcattcaacccagcagtgataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33116412 |
actccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataagagaaccaaacgcattcaacccagcagtgataa |
33116313 |
T |
|
| Q |
101 |
gagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctacaaattgttggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116312 |
gagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctacaaattgttggaa |
33116213 |
T |
|
| Q |
201 |
tatttgaaggcccattcctgcatacaaac |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33116212 |
tatttgaaggcccattcctgcatacaaac |
33116184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 33119398 - 33119333
Alignment:
| Q |
164 |
agtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaac |
229 |
Q |
| |
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||||||| || || |||||||| |||||||||||||| ||| ||| |||||||||||||| |||| |
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| T |
33119398 |
agtacatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaac |
33119333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1084000 - 1084228
Alignment:
| Q |
1 |
actccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataagcgaaccaaacgcattcaacccagcagtgataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1084000 |
actccaaacaaactaatcaaagctagcttctttctcccggttttatcaatgaaatatatgcttataagcgaaccaaacgtattcaacccagcagtgataa |
1084099 |
T |
|
| Q |
101 |
gagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctacaaattgttggaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1084100 |
gagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacgatattgattcctacaaattgttggaa |
1084199 |
T |
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| Q |
201 |
tatttgaaggcccattcctgcatacaaac |
229 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
1084200 |
tatttgaaggcccattcctgcatacaaac |
1084228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 21559150 - 21559351
Alignment:
| Q |
28 |
ttctttctcccggttttatcgatgaaatatatgcttataagcgaaccaaacgcattcaacccagcagtgataagagacagaagcattgcggtttgattag |
127 |
Q |
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||||| || ||||| || ||||| || |||||||| | || ||||||||| ||||| | ||||| |||| || |||||||| | ||| |||| || | |
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| T |
21559150 |
ttcttccttccggtcttgtcgataaagtatatgctcaaaatcgaaccaaatgcattaattccagctgtgacgagcgacagaagaagtgctgttttgtttg |
21559249 |
T |
|
| Q |
128 |
atgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaa |
227 |
Q |
| |
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|||||||||||||||||||||| || ||||| ||| |||||||||| || |||||||| |||||||||||||| ||||| || |||| ||||||||| || |
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| T |
21559250 |
atgcaaaaccagctagttgaacgatggttggactgtagtacattactgtgttgattccgacaaattgttggaagatttgtagtcccactcctgcatataa |
21559349 |
T |
|
| Q |
228 |
ac |
229 |
Q |
| |
|
|| |
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|
| T |
21559350 |
ac |
21559351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 21492446 - 21492547
Alignment:
| Q |
9 |
caaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataagcgaaccaaacgcattcaacccagcagtgataagagacaga |
108 |
Q |
| |
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|||||||||||| || || ||||| ||||| ||||| ||||||||||||||||| | || ||||| || ||||| | |||| |||||| ||||||||| |
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| T |
21492446 |
caaactaatcaatgcaagtttcttcctcccagttttgtcgatgaaatatatgctcagaattgaaccgaatgcattgaggccagaagtgattagagacaga |
21492545 |
T |
|
| Q |
109 |
ag |
110 |
Q |
| |
|
|| |
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|
| T |
21492546 |
ag |
21492547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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