View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_low_32 (Length: 242)
Name: NF11916_low_32
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 33116550 - 33116786
Alignment:
| Q |
1 |
caaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaactttgcatgatagctaatcaagagtattatatatgcagctgt |
100 |
Q |
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| T |
33116550 |
caaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaaatttgcatgatagctaatcaagagtattatatatgcagctgt |
33116649 |
T |
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| Q |
101 |
taccaggtgcatgcttgatctcaaatgacatgacaaagaaccaatgtcaaaaaggacacagatcatggtatacacaaggatgtcctagcaaattgggttg |
200 |
Q |
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| T |
33116650 |
taccaggtgcatgcttgatctcaaatgacatgacaaagaaccaatgtcaaaaaggacacagatcatggtatacacaaggatgtcctagcaaattgggttg |
33116749 |
T |
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| Q |
201 |
gcttgcactgatcggattggctctctatatactgttc |
237 |
Q |
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| T |
33116750 |
gcttgcactgattggattggctctctatatactgttc |
33116786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1083810 - 1083768
Alignment:
| Q |
1 |
caaggtaaatatgcaatcttcctctttccataggccattttta |
43 |
Q |
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| T |
1083810 |
caaggtaaatatgcaatcttcctctttccataggccattttta |
1083768 |
T |
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