View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_low_35 (Length: 225)
Name: NF11916_low_35
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_35 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 44606231 - 44606444
Alignment:
| Q |
14 |
acttttttggtatctcccaaattgtgtccaacctctctgtgctctacgtgaaa--accaaaaatgaaaatttggtaggagcagagggtgaatggaaaatc |
111 |
Q |
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| T |
44606231 |
acttttttggtatctcccaaattgtgtccaacctctctgcgatctacgtaaaattaccaaaaatgaaaatttggtaggagcagagggtgaatggcaaatc |
44606330 |
T |
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| Q |
112 |
tttgtttttgggcaaaaaccataactacagcattgcgtagaatctgcttcatactttgtcggcgtttttgtattgatgttttagtatttaatatttcagt |
211 |
Q |
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| T |
44606331 |
tttgtttttgggcaaaaaccataactacagcattgcgtagaatctgcttcatactttgtcggtgtttttgtattgatgttttagtatttaatatttcagt |
44606430 |
T |
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| Q |
212 |
ggtgaaggaatccc |
225 |
Q |
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| T |
44606431 |
ggtgaaggaatccc |
44606444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 44627720 - 44627935
Alignment:
| Q |
16 |
ttttttggtatctcccaaattgtgtccaacctctctgtgctctacgtgaaaac---caaaa-atgaaaatttggtaggagcagag--ggtgaatggaaaa |
109 |
Q |
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| T |
44627720 |
ttttttgggatcccccaaattttgtccaacctgtctgtgctctacgtgaaatcatccaaagtatgataatttggtaggagcagagagggtgaatactaaa |
44627819 |
T |
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| Q |
110 |
tctttgtttttgggcaaaaaccataactacagcattgcgtagaatctgcttcatactttgtcggcgtttttgtattgatgttttagtatttaatatttca |
209 |
Q |
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| T |
44627820 |
tcttcgttttcgggcaaaaaccataactatagtattacatataatctgctgaatactttgtcggtgtttttgtattgatgttttagtatttaatatttca |
44627919 |
T |
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| Q |
210 |
gtggtgaaggaatccc |
225 |
Q |
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| T |
44627920 |
gtggtgaaggaatccc |
44627935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 591503 - 591297
Alignment:
| Q |
22 |
ggtatctcccaaattgtgtccaacctctctgtgctctacgtgaaaac---caaaaa-tgaaaatttggtaggagcagagggtgaatggaaaatctttgtt |
117 |
Q |
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| T |
591503 |
ggtatctcccaaattgtttttaacctgtctgtgccatacgtgaaatcttccaaaatctgacaattcggtgggagcatagagtgaatggaaaatctttgtt |
591404 |
T |
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| Q |
118 |
tttgggcaaaaac-cataactacagcattgcgtagaatctgcttcatactttgtcggcgtttttgtattgatgttttagtatttaatatttcagtggtga |
216 |
Q |
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| T |
591403 |
tccggggaaaaaagcattactataatgttacgtaaaagctgcttaattcgttgtcggtgtttttgtattgatgttctagtatttgatatttcagtggtga |
591304 |
T |
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| Q |
217 |
aggaatc |
223 |
Q |
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| T |
591303 |
aggaatc |
591297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 183045 - 183083
Alignment:
| Q |
187 |
atgttttagtatttaatatttcagtggtgaaggaatccc |
225 |
Q |
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| T |
183045 |
atgttttagtatttgatatttcaatggtgaaggaatccc |
183083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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