View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_low_36 (Length: 217)
Name: NF11916_low_36
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 9123305 - 9123516
Alignment:
| Q |
1 |
aagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9123305 |
aagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
9123404 |
T |
|
| Q |
101 |
aatgaatgaccacacagattctccagctcgttataagacaacaaattatcatcaataaacgccgttctttttatgctttgtatcatcaatttagcagctt |
200 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9123405 |
aatgaatgaccgcacagattctccagctcgttataagacaacaaattatcatcaataaacgccgttctttttatgctttgtatcatcaatttagcagctt |
9123504 |
T |
|
| Q |
201 |
ccctttgcttct |
212 |
Q |
| |
|
||||||| |||| |
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|
| T |
9123505 |
ccctttgtttct |
9123516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 9131412 - 9131623
Alignment:
| Q |
1 |
aagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9131412 |
aagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
9131511 |
T |
|
| Q |
101 |
aatgaatgaccacacagattctccagctcgttataagacaacaaattatcatcaataaacgccgttctttttatgctttgtatcatcaatttagcagctt |
200 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9131512 |
aatgaatgaccgcacagattctccagctcgttataagacaacaaattatcatcaataaacgccgttctttttatgctttgtatcatcaatttagcagctt |
9131611 |
T |
|
| Q |
201 |
ccctttgcttct |
212 |
Q |
| |
|
||||||| |||| |
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|
| T |
9131612 |
ccctttgtttct |
9131623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 24525173 - 24525384
Alignment:
| Q |
1 |
aagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
100 |
Q |
| |
|
|||||| |||||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24525173 |
aagaaacttctcctcattcaaatcattcactcccataatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgc |
24525272 |
T |
|
| Q |
101 |
aatgaatgaccacacagattctccagctcgttataagacaacaaattatcatcaataaacgccgttctttttatgctttgtatcatcaatttagcagctt |
200 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24525273 |
aatgaatgaccgcacagattctccagctcgttataagacaacaaattatcatcaataaacgccgttctttttatgctttgtatcatcaatttagcagctt |
24525372 |
T |
|
| Q |
201 |
ccctttgcttct |
212 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
24525373 |
ctctttgtttct |
24525384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9039026 - 9038960
Alignment:
| Q |
1 |
aagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaat |
67 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||| |
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|
| T |
9039026 |
aagaaatttctcctcgttcaaatctgtcactcccataatctcatcctttaaaaccaaccccacaaat |
9038960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 39815021 - 39814978
Alignment:
| Q |
169 |
ttttatgctttgtatcatcaatttagcagcttccctttgcttct |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
39815021 |
ttttatgctttgtatcatcaatttagcagcttccctttgtttct |
39814978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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