View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11916_low_9 (Length: 500)
Name: NF11916_low_9
Description: NF11916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11916_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 44728328 - 44727976
Alignment:
| Q |
19 |
atatagacctaaaatccgaggttaggatcctttctactttctattattttcatttcctctactaagatcccctgttagcattatcaatattaaagacaca |
118 |
Q |
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| T |
44728328 |
atatagacctaaaatctgaggttaggatcctttctactttctattattttcatttcctctactaagatcccccgttagcattatcaatattaaagacaca |
44728229 |
T |
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| Q |
119 |
atttatgaaaccactatcatgtccaaaaaccggtgattgaaaatgacgagaaaagattctcggcagtgagatcttaaccatccattgtgtttaccatatg |
218 |
Q |
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| T |
44728228 |
atttatgaaaccactatcatgtccaaaaaccggtgattgaaaatgacgagaaaagattctcggcagtgagatcttaaccatccattgtgtttaccatatg |
44728129 |
T |
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| Q |
219 |
caggcaaagtcaaatgaaaggaatctaaatggtccttaattacaacggacactctccaatgagattatcacggaagagaatcctaatccgaaaatggcag |
318 |
Q |
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| T |
44728128 |
caggcaaagtcaaatgaaaggaatctaaatggtccttaattacaacggacactctccaatgagattatcacggaagagaatcctaatccgaaaatggcag |
44728029 |
T |
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| Q |
319 |
ggagaccatccgacccaggtactgcagggctcttcatttgggatacagcaatg |
371 |
Q |
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| T |
44728028 |
ggagaccatccgacccaggtactgcctggctcttcatttgggatacagcaatg |
44727976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 370 - 492
Target Start/End: Complemental strand, 44727746 - 44727625
Alignment:
| Q |
370 |
tgaagagttatatatatagattcataaagatggttttctttttattgttgatttttaattttaaagaacatatagtgtaatcatttagcacgaggaaaac |
469 |
Q |
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| T |
44727746 |
tgaagagttatatatataaattcataaagatggttttctttt-attgttgatttttaattttaaagaacatatagtgtaatcatttagcacgaggaaaac |
44727648 |
T |
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| Q |
470 |
gttttggatatctagcctatgct |
492 |
Q |
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| T |
44727647 |
gttttggatatccaggctatgct |
44727625 |
T |
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