View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11917_high_2 (Length: 822)
Name: NF11917_high_2
Description: NF11917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11917_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 268 - 809
Target Start/End: Original strand, 28636105 - 28636671
Alignment:
| Q |
268 |
aaatggaaggatgcccaatgtaggcagaaacaa---caatacaacataagtgaactctgatta---ataatgtaacattt-----------------gat |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||||||||||| ||| |
|
|
| T |
28636105 |
aaatggaaggatgcccaatgtaggcagaaacaaagacaatacaacataagtggacactgattattaataatgtaacattttattaactggtcactttgat |
28636204 |
T |
|
| Q |
345 |
tgaatcaggagcacactcagttggaagagtacactgcatgaatttagtccacagactgtaccccacagtggacccaacgctagaccctacacatgctgcc |
444 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||| |||| |||||||||||| || |
|
|
| T |
28636205 |
taaatcaggagcacactcagttggaagagtacattgcatgaatttggtccacagactataccccacagtggatccaacgttagatcctacacatgctacc |
28636304 |
T |
|
| Q |
445 |
tacctaaaacgtagatgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaatgatctaaaaacaccaatgataattgacaacaactact |
544 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28636305 |
tacctaaaacgtaggtgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaatgatctaaaaacaccaatgataattgacaacaactact |
28636404 |
T |
|
| Q |
545 |
acaaaaacatcttgcaacataagggtcttctcactgtggatgaagaactggccactgacccaataacatcaccttatgtacaaaaaatggcagatgataa |
644 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||| ||||||||||||||| |||||||||||| |||||| |
|
|
| T |
28636405 |
acaaaaacatcttgcaacataagggtcttctaactgtggatgaagaattagccactgatccaagaacatcaccttatgtgaaaaaaatggcagctgataa |
28636504 |
T |
|
| Q |
645 |
tggttacttcaatgaccaattctcaagggctgttcttttgttatcagagaataatcctcttattggagatcaaggtgaaatcagaaaggattgtcgcttc |
744 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
28636505 |
tggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttattggagatcaaggtgaaatcagaaaggattgtcgatac |
28636604 |
T |
|
| Q |
745 |
gttaatgccaattagagataaataattatctagcagtatat--cttatatttgtctttgcattgcat |
809 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| ||||| ||| ||||| | |||||||||||| |
|
|
| T |
28636605 |
gttaatgccaattagatataaataattagctagcaatatatagcttgtatttatatttgcattgcat |
28636671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 341 - 784
Target Start/End: Original strand, 28656695 - 28657136
Alignment:
| Q |
341 |
tgattgaatcaggagcacactcagttggaagagtacactgcatgaatttagtccacagactgtaccccacagtggacccaacgctagaccctacacatgc |
440 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| ||| | ||||||||||| ||||| | ||||||||||||||||||||||||| ||| |
|
|
| T |
28656695 |
tgattgaatcaggagcacattcagtgggaagagtacactgcataaatatggtccacagactataccctatagtggacccaacgctagaccctacatatgt |
28656794 |
T |
|
| Q |
441 |
tgcctacctaaaacgtagatgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaatgatctaaaaacaccaatgataattgacaacaac |
540 |
Q |
| |
|
|| |||||||||||||||||| |||| |||||| ||| | ||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
28656795 |
tgtctacctaaaacgtagatgtccaaaaccaaacccaaaggcaaaagctgtccaatatgtaaggaatgatctaaaaactccattgataattgacaacaac |
28656894 |
T |
|
| Q |
541 |
tactacaaaaacatcttgcaacataagggtcttctcactgtggatgaagaactggccactgacccaataacatcaccttatgtacaaaaaatggcagatg |
640 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28656895 |
tactacaagaacattttgcaacataagggtcttctaactgtggatgaagaactagccactgacccaataacatcaccttatgtacaaaaaatggcagatg |
28656994 |
T |
|
| Q |
641 |
ataatggttacttcaatgaccaattctcaagggctgttcttttgttatcagagaataatcctcttattggagatcaaggtgaaatcagaaaggattgtcg |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28656995 |
ataatggttacttcaatgaccaattctcaagggctgttcttttgttatcagagaataatcctcttattggagatcaaggtgaaatcagaaaggattgtcg |
28657094 |
T |
|
| Q |
741 |
cttcgttaatgccaattagagataaataattatctagcagtata |
784 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| |||||| |||| |
|
|
| T |
28657095 |
cttcgttaatgccaatt--agatatataattagctagcaatata |
28657136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 339 - 759
Target Start/End: Original strand, 28606414 - 28606834
Alignment:
| Q |
339 |
tttgattgaatcaggagcacactcagttggaagagtacactgcatgaatttagtccacagactgtaccccacagtggacccaacgctagaccctacacat |
438 |
Q |
| |
|
||||||| ||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
28606414 |
tttgattcaattaggagcacactcggttggaagagtacattgcatgaatttggtccacagactataccccacagtggatccaacgttagatcctacacat |
28606513 |
T |
|
| Q |
439 |
gctgcctacctaaaacgtagatgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaatgatctaaaaacaccaatgataattgacaaca |
538 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606514 |
gctgcctacctaaaacgtaggtgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaatgatctaaaaacaccaatgataattgacaaca |
28606613 |
T |
|
| Q |
539 |
actactacaaaaacatcttgcaacataagggtcttctcactgtggatgaagaactggccactgacccaataacatcaccttatgtacaaaaaatggcaga |
638 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
28606614 |
actactacaaaaacatcttgcaacataagggtcttctaacagtggatgaagaactagctactgatccaagaacatcaccttatgtgaaaaaaatggcagc |
28606713 |
T |
|
| Q |
639 |
tgataatggttacttcaatgaccaattctcaagggctgttcttttgttatcagagaataatcctcttattggagatcaaggtgaaatcagaaaggattgt |
738 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28606714 |
tgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttattggagatcaaggtgaaattagaaaggattgc |
28606813 |
T |
|
| Q |
739 |
cgcttcgttaatgccaattag |
759 |
Q |
| |
|
|| | |||||||||||||||| |
|
|
| T |
28606814 |
cgttacgttaatgccaattag |
28606834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 339 - 759
Target Start/End: Original strand, 28663769 - 28664189
Alignment:
| Q |
339 |
tttgattgaatcaggagcacactcagttggaagagtacactgcatgaatttagtccacagactgtaccccacagtggacccaacgctagaccctacacat |
438 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||||| ||||||||| | ||||| ||||| |||||||| |||||||||| ||||||||| ||| || |
|
|
| T |
28663769 |
tttgattcaatcaggaggacactcagtgggaagagtacattgcatgaatatggtccatagactataccccacggtggacccaaagctagaccccacatat |
28663868 |
T |
|
| Q |
439 |
gctgcctacctaaaacgtagatgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaatgatctaaaaacaccaatgataattgacaaca |
538 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||| ||||| | ||||| || |||||| |||||||||||||||||||||||||| |
|
|
| T |
28663869 |
gctgcctatctaaaacttagatgcccaacaccaaatccagatccaaatgctgttctatatgcaagaaatgatagaaaaacaccaatgataattgacaaca |
28663968 |
T |
|
| Q |
539 |
actactacaaaaacatcttgcaacataagggtcttctcactgtggatgaagaactggccactgacccaataacatcaccttatgtacaaaaaatggcaga |
638 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
28663969 |
actactacaaaaacatcttgcaacataagggtcttctaacagtggatgaagaactagctactgatccaagaacatcaccttatgtgaaaaaaatggcagc |
28664068 |
T |
|
| Q |
639 |
tgataatggttacttcaatgaccaattctcaagggctgttcttttgttatcagagaataatcctcttattggagatcaaggtgaaatcagaaaggattgt |
738 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
28664069 |
tgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcggagaataatcctcttaccggagatcaaggtgaaattcgaaaggattgt |
28664168 |
T |
|
| Q |
739 |
cgcttcgttaatgccaattag |
759 |
Q |
| |
|
|| | |||||||||||||||| |
|
|
| T |
28664169 |
cgttacgttaatgccaattag |
28664189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 28635847 - 28636038
Alignment:
| Q |
13 |
atgaagagtggaagaagggatagcaaagaaagctatgcaactgtggtggaagaattaattccaaaccataatgactcaatatccttagtgctctctcgtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
28635847 |
atgaagagtggaagaagggatagcaaagaaagttatgcaaatgtggtggaagaattcattccaaaccataatgactcaatatccttagtgttgtctcgtt |
28635946 |
T |
|
| Q |
113 |
ttcaagctattggtgttgacgttgaagccacggttgctcttttaggtaccaaacattcttc-tggctaattggtttttgactttcagttaca |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28635947 |
ttcaagctatcggtgttgacgttgaagccacggttgctcttttaggtaccaaacattcttcttggctaattggtttttgactttcagttaca |
28636038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 28656354 - 28656529
Alignment:
| Q |
13 |
atgaagagtggaagaagggatagcaaagaaagctatgcaactgtggtggaagaattaattccaaaccataatgactcaatatccttagtgctctctcgtt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||| ||| || |||||||||||| |||||| |
|
|
| T |
28656354 |
atgaagagtggaagaagggatagcaaagaaagctatgtaacggtggtggaagaatccattccaagccataatgcctccatgtccttagtgctcactcgtt |
28656453 |
T |
|
| Q |
113 |
ttcaagctattggtgttgacgttgaagccacggttgctcttttaggtaccaaacattcttc-tggctaattggttt |
187 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28656454 |
tccaagctattggtgttgatgttgaagccacggttgctcttttaggtaccaaacattcttcttggctaattggttt |
28656529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 28605937 - 28606095
Alignment:
| Q |
13 |
atgaagagtggaagaagggatagcaaagaaagctatgcaactgtggtggaagaattaattccaaaccataatgactcaatatccttagtgctctctcgtt |
112 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| || ||||||||| |||| |||||||| ||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
28605937 |
atgaagagtggacgaaaggatagcaaagaaagctatgtaaaggtggtggaacaattcattccaaatcataatgactcaatatcctcagtgctttctagtt |
28606036 |
T |
|
| Q |
113 |
ttcaagctattggtgttgacgttgaagccacggttgctcttttaggtaccaaacattct |
171 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28606037 |
ttcaagccattggcattgacgttgaagccacggttgctcttttaggtaccaaatattct |
28606095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 28663394 - 28663542
Alignment:
| Q |
13 |
atgaagagtggaagaagggatagcaaagaaagctatgcaactgtggtggaagaattaattccaaaccataatgactcaatatccttagtgctctctcgtt |
112 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||| ||| ||| |||| |||||||| |||||||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
28663394 |
atgaagacaggacgaagggatggcaaagaaagccatgtaacaatggtagaagaattcattccaaatcataatgactccatatccttagtgctttctcgtt |
28663493 |
T |
|
| Q |
113 |
ttcaagctattggtgttgacgttgaagccacggttgctcttttaggtac |
161 |
Q |
| |
|
||||||| |||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
28663494 |
ttcaagccattggtgtagacgttgaagcaactgttgctcttttaggtac |
28663542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 28636063 - 28636107
Alignment:
| Q |
199 |
ttacattaacatttactttcaaaagtcaaacataaacataataaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28636063 |
ttacattaacatttactttcaaaagtcaaccataaacataataaa |
28636107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 28656553 - 28656602
Alignment:
| Q |
199 |
ttacattaacatttactttcaaaagtcaaacataaacataataaaccacc |
248 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
28656553 |
ttacataaacatttactgtcaaaacacaaacataaacataattaaccacc |
28656602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University