View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11917_low_1 (Length: 883)
Name: NF11917_low_1
Description: NF11917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11917_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 698; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 21 - 865
Target Start/End: Original strand, 362703 - 363542
Alignment:
| Q |
21 |
cacaacaaacctaatcactattactgtctaaaataaactgaacatagatattgatggagtactttcaatggtgaaaaacaacctatcaccaattttgaca |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
362703 |
cacaacaaacctaatcactattactgtataaaataaactgaacatagatattgatggagtactttcaatgatgaaaaacaacctatcaccaattttgaca |
362802 |
T |
|
| Q |
121 |
ttcctctcctaaatgaacttgcaccaaccaccaactagatatctcttacgtggaatcatgctctttggaaccaacactgttcacaaagcnnnnnnnnnnn |
220 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
362803 |
ttcctctcctaaataaacttgcaccaaccaccaactagatatctcttatgtggaatcatgctctttggaacctacactgttcacaaagcaaaaaaaaaaa |
362902 |
T |
|
| Q |
221 |
nnnngttataatatcatacattatgaaattaataggaaaacataacttatttcaataataatcaattgatgaagcatattgatannnnnnnnccacgcgc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
362903 |
----gttataatatcatacattatgaaattaataggaaaacataacttatttcaataataatcaattgatgaagcatattgatattttttt-ccacgcgc |
362997 |
T |
|
| Q |
321 |
ctctatagataggaatctactaatatttgtaatcataaagatttaaaatcataacatataaactaatcatacattttctcaacattccagccactttaga |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
362998 |
ctctatagataggaatctactaatatttgtaatcataaagatttaaaatcataacatataaactaatcataccttttctcaacattccagccactttaga |
363097 |
T |
|
| Q |
421 |
gtccatcagcaatatttggagacatggaggaagatgatccggaataattccgtcggtaatgatggggatcatgatcatgagacttaggcattggattctc |
520 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
363098 |
ggccatcagcaatatttggagacatggaggaagatgatccggaataattccgacggtaacgatggggatcatgatcatgagacttaggcattgaattctc |
363197 |
T |
|
| Q |
521 |
ctgtacttttacctggtcgagacttagaaattttaacttgatttgttctggcgagccatacaacccaggtaagtggttcatattatcagctaacattgta |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
363198 |
ctgtacttttacctggtcgagacttagaaattttaacttgatttattctggcgagccatacaacccaggtaagtggttcatattatcagctaacattgta |
363297 |
T |
|
| Q |
621 |
tctaacaccttgtcgtatacgttcttataagaaaactcgttgttttcaaaagacttgatgcagtaaatcaacgtttcagtgaaataacaaccactgaccg |
720 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
363298 |
tctaacaccttgtcgtatacattcttataagaaaactcgttgttttcaaaagacttgatgcagtaaatcaacgtttcagtgaaataacaacctctgaccg |
363397 |
T |
|
| Q |
721 |
aataactcttgtaacgaatgcgaccttttcctgtaatctgtcccgtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgc |
820 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
363398 |
aatgactcttgtaacgaatgcgaccttttcatgtaatctgtcccgtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgt |
363497 |
T |
|
| Q |
821 |
cattcctttgtcagtcacagggagaaggttactgacaccaccttc |
865 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
363498 |
cattcctttgtcagtgacagggagaaggttactgacaccaccttc |
363542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 41024307 - 41024141
Alignment:
| Q |
32 |
taatcactattactgtctaaaataaactgaacatagatattgatggagtactttcaatggtgaaaaacaacctatcaccaattttgacattcctctccta |
131 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
41024307 |
taatcactatcactgtctaaaataaaccgaacataaatattgttggagtactttcaatggtgaaaaacaacctatcaccaattttggcattcctgtcctg |
41024208 |
T |
|
| Q |
132 |
aatgaacttgcaccaaccaccaactagatatctcttacgtggaatcatgctctttggaaccaacact |
198 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41024207 |
aatgaacttgcaccaaccactaactagatatctcttatgtggaatcatgctctttggaaccaacact |
41024141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 471 - 863
Target Start/End: Complemental strand, 41024094 - 41023696
Alignment:
| Q |
471 |
cgtcggtaatgatggggatcatgatcatgagacttaggcattggattctcctgtacttttacctggtcgagacttagaaattttaacttgatttgttctg |
570 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| || |
|
|
| T |
41024094 |
cgtcggtaacgaaggggaacatgatcatgagactcagacattggattctcctctacttttacatggtcgagacttataaattttaacttgatttgttatg |
41023995 |
T |
|
| Q |
571 |
gcgagccatacaacccaggtaagtggttcatattatcagctaacattgtatctaacaccttgtcgtatacgttcttataagaaaactcgttgttttcaaa |
670 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||||||||||| | || | || ||||||||| |||||||| ||||| |||||||| | ||| |
|
|
| T |
41023994 |
gcgagccatacaacccaagtaagttgttcatcttatcagctaacattttttcacatactgagtcgtatacattcttatacgaaaaatcgttgttcttaaa |
41023895 |
T |
|
| Q |
671 |
agacttgatgcagtaaatcaacgtttcagtgaaataacaaccactgaccgaataa------ctcttgtaacgaatgcgaccttttcctgtaatctgtccc |
764 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| |||| | ||| || || ||| |||| |||| || |||| || |||||| || |
|
|
| T |
41023894 |
agacttgatgatgtaaatcaacgtttcagtgcaatatgcaccagttacccaagaatccgtcttctcgtaataaatgtgatatttttctataatctatcaa |
41023795 |
T |
|
| Q |
765 |
gtttggcatgcggacatgtaaactcctaatccccgctttgtcgaagcatttggtgccattcctttgtcagtcacagggagaaggttactgacaccacct |
863 |
Q |
| |
|
|||| ||| ||||||| |||||| | || || || |||| ||||||| ||||||| |||| ||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
41023794 |
gtttagcaagcggacaagtaaacacatattctccactttttcgaagcttttggtgtcatttgtttgtcagtgatagggagaaggttactgacaccacct |
41023696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University