View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11917_low_13 (Length: 239)
Name: NF11917_low_13
Description: NF11917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11917_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 15799998 - 15800154
Alignment:
| Q |
1 |
tctgtgtttgcggttctggaaaagcaaggacaattgaaatggaaacatgaacagtttaatggtttctttgttcaatcagagtctctatgcttgactggtg |
100 |
Q |
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| T |
15799998 |
tctgtgtttgcggttctggaaaagcaaggacaattgaaatggaaacatgaacagtttaatggtttctttgttcaatcagagtctctatgcttgactgctg |
15800097 |
T |
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| Q |
101 |
tatataaacattttttggacaatgaataaagtaagattcctttttaccaatcataac |
157 |
Q |
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| T |
15800098 |
tatataaacattttttggacatggaataaagtaagattcctttttaccaatcataac |
15800154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 15819838 - 15819905
Alignment:
| Q |
82 |
tctctatgcttgactggtgtatataaacattttttggacaatgaataaagtaagattcctttttacca |
149 |
Q |
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| T |
15819838 |
tctctacgcttgactggtgcatataaatattttttggacaatgaataatgtaagattcctttttacca |
15819905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 15819375 - 15819433
Alignment:
| Q |
1 |
tctgtgtttgcggttctggaaaagca-aggacaattgaaatggaaacatgaacagttta |
58 |
Q |
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| T |
15819375 |
tctgcgtttgcggttctggaaaagccgaggacaattgaaatggaaacatgaacaattta |
15819433 |
T |
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