View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11917_low_14 (Length: 236)
Name: NF11917_low_14
Description: NF11917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11917_low_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 3892299 - 3892534
Alignment:
| Q |
1 |
attaaaattaacctcacaaaaaagtgtaaaacgacaagttttgaaacatgccacggttctttgaatcctaaaaagaaatctagtatttaaggagttatgt |
100 |
Q |
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| T |
3892299 |
attaaaattaaactcacaaaaaagtgtaaaacgacaagttttgaaacatgccacggttctttgaatcctaaaaagaaatctagtatttaaggagttatgt |
3892398 |
T |
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| Q |
101 |
tcctcacacacaacactgtcttttcttaacaacctcaaattcctcaaaaatctttctctcttcattctttcttttcacttatcttctaatcatttacaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3892399 |
tcctcacacacaacactgtcttttcttaacaacctcaaattcctcaaaaatctttctctcttcattctttcttttcacttatcttctaatcatttacaca |
3892498 |
T |
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| Q |
201 |
cattcttagtaaaattatttgtaaccaacaaaaaat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3892499 |
cattcttagtaaaattatttgtaaccaacaaaaaat |
3892534 |
T |
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