View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11917_low_15 (Length: 212)

Name: NF11917_low_15
Description: NF11917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11917_low_15
NF11917_low_15
[»] chr1 (14 HSPs)
chr1 (16-131)||(8678024-8678139)
chr1 (123-212)||(8678506-8678599)
chr1 (173-212)||(15646211-15646250)
chr1 (173-212)||(29307429-29307468)
chr1 (173-212)||(5963065-5963104)
chr1 (173-212)||(17433702-17433741)
chr1 (173-212)||(21856061-21856100)
chr1 (173-208)||(29306972-29307007)
chr1 (173-212)||(33143936-33143975)
chr1 (173-212)||(33144406-33144445)
chr1 (151-212)||(5539812-5539874)
chr1 (173-205)||(5540312-5540344)
chr1 (173-205)||(39154514-39154546)
chr1 (173-205)||(50970297-50970329)
[»] scaffold0295 (1 HSPs)
scaffold0295 (173-212)||(4812-4851)
[»] chr8 (10 HSPs)
chr8 (173-212)||(11656474-11656513)
chr8 (173-212)||(33742941-33742980)
chr8 (173-212)||(9178122-9178161)
chr8 (173-212)||(9928928-9928967)
chr8 (173-212)||(13225126-13225165)
chr8 (173-212)||(33328177-33328216)
chr8 (173-212)||(41681153-41681192)
chr8 (173-205)||(11656951-11656983)
chr8 (173-205)||(31133239-31133271)
chr8 (173-205)||(34541042-34541074)
[»] chr6 (14 HSPs)
chr6 (173-212)||(2319691-2319730)
chr6 (173-212)||(18257624-18257663)
chr6 (173-212)||(23075615-23075654)
chr6 (173-209)||(31470334-31470370)
chr6 (173-212)||(1149484-1149523)
chr6 (173-212)||(10900417-10900456)
chr6 (173-212)||(12935176-12935215)
chr6 (173-212)||(15828128-15828167)
chr6 (173-212)||(20741119-20741158)
chr6 (173-212)||(22219840-22219879)
chr6 (173-212)||(23074018-23074057)
chr6 (173-210)||(11445476-11445513)
chr6 (173-210)||(18504938-18504975)
chr6 (176-212)||(10899961-10899997)
[»] chr5 (12 HSPs)
chr5 (173-212)||(164210-164249)
chr5 (149-212)||(2865242-2865306)
chr5 (176-212)||(18182992-18183028)
chr5 (173-212)||(5818948-5818987)
chr5 (173-212)||(5819416-5819455)
chr5 (173-212)||(14215730-14215769)
chr5 (173-212)||(15372360-15372399)
chr5 (173-212)||(18183456-18183495)
chr5 (173-212)||(19359623-19359662)
chr5 (173-212)||(24331578-24331617)
chr5 (167-208)||(4624716-4624757)
chr5 (173-210)||(8647457-8647494)
[»] chr2 (12 HSPs)
chr2 (173-212)||(11091007-11091046)
chr2 (173-212)||(22374339-22374378)
chr2 (176-212)||(40027162-40027198)
chr2 (173-212)||(26538566-26538605)
chr2 (173-212)||(28616632-28616671)
chr2 (173-212)||(35781150-35781189)
chr2 (173-212)||(40815364-40815403)
chr2 (173-212)||(40815832-40815871)
chr2 (173-210)||(14432630-14432667)
chr2 (173-205)||(3025485-3025517)
chr2 (173-205)||(18450849-18450881)
chr2 (173-205)||(43058826-43058858)
[»] chr7 (10 HSPs)
chr7 (173-209)||(34533810-34533846)
chr7 (173-212)||(2658858-2658897)
chr7 (173-212)||(4478187-4478226)
chr7 (173-212)||(19590544-19590583)
chr7 (173-212)||(19830439-19830478)
chr7 (173-212)||(35289388-35289427)
chr7 (175-212)||(19591012-19591049)
chr7 (173-212)||(23952749-23952789)
chr7 (173-205)||(23953223-23953255)
chr7 (173-205)||(37787261-37787293)
[»] chr3 (12 HSPs)
chr3 (173-209)||(4275854-4275890)
chr3 (173-212)||(25612464-25612503)
chr3 (173-212)||(25853253-25853292)
chr3 (173-212)||(30098250-30098289)
chr3 (173-212)||(30104501-30104540)
chr3 (173-212)||(31779139-31779178)
chr3 (173-212)||(32535450-32535489)
chr3 (173-212)||(39556064-39556103)
chr3 (173-212)||(50116896-50116935)
chr3 (173-210)||(20840579-20840616)
chr3 (173-210)||(27393680-27393717)
chr3 (173-210)||(39555597-39555634)
[»] scaffold0019 (1 HSPs)
scaffold0019 (173-212)||(134160-134199)
[»] chr4 (13 HSPs)
chr4 (173-212)||(12234816-12234855)
chr4 (173-212)||(15523254-15523293)
chr4 (173-208)||(18764011-18764046)
chr4 (173-212)||(23494930-23494969)
chr4 (173-212)||(43243767-43243806)
chr4 (173-212)||(45082911-45082950)
chr4 (173-212)||(54995554-54995593)
chr4 (173-210)||(4219576-4219613)
chr4 (173-210)||(11153636-11153673)
chr4 (173-210)||(22434665-22434702)
chr4 (173-210)||(43281279-43281316)
chr4 (176-212)||(25447723-25447759)
chr4 (149-212)||(51021282-51021346)
[»] scaffold0113 (1 HSPs)
scaffold0113 (176-212)||(28730-28766)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 8678024 - 8678139
Alignment:
Q  16 tttgtttcgtcaccgaaaaggaaataatatgagtcggtgtttaccgtttttgttcgttgggtaattcaacaaaatgaaaatcaaatgtcattattcttac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8678024 tttgtttcgtcaccgaaaaggaaataatatgagtcggtgtttaccgtttttgttcgttgggtaattcaacaaaatgaaaatcaaatgtcattattcttat 8678123  T
Q  116 gtagtagttcaatgta 131  Q
    ||||||||||||||||    
T  8678124 gtagtagttcaatgta 8678139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 8678506 - 8678599
Alignment:
Q  123 ttcaatgtattatgtatagatactttaaaata---tgcttaataaca-ttttcctcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||||||| ||||||||||||||   |||||||| ||| ||||  ||||||||||||| ||||||||||||||||||| ||||||    
T  8678506 ttcaatgtattatgtatcgatactttaaaataatatgcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgccct 8678599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 15646211 - 15646250
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  15646211 tcctcgtgttttggcctactcacgaaactggtcatgccct 15646250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 29307468 - 29307429
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  29307468 tcctcgtgttttgacctactcacgaaactggtcctgccct 29307429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 5963104 - 5963065
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  5963104 tcctcgtgttttggcctactcacgaaactgatcatgccct 5963065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 17433741 - 17433702
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  17433741 tcctcgtgttctggcctactcacgaaactggtcatgccct 17433702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 21856061 - 21856100
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  21856061 tcctcgtgttttgatctactcacgaaactggtcctgccct 21856100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 29306972 - 29307007
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatg 208  Q
    ||||||||||||| ||||||||||||||||||||||    
T  29306972 tcctcgtgttttggcctactcacgaaactggtcatg 29307007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 33143936 - 33143975
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  33143936 tcctcgtgttttggcctactcacgaaactggtcctgccct 33143975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 33144445 - 33144406
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  33144445 tcctcgtgttttggcctactcacgaaactggtcctgccct 33144406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 5539812 - 5539874
Alignment:
Q  151 aatatgcttaataaca-ttttcctcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||||||||| ||| ||||  ||||||||||||| ||||||||||||| ||||| ||||||    
T  5539812 aatatgcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgccct 5539874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 5540344 - 5540312
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtc 205  Q
    ||||||||||||| |||||||||||||||||||    
T  5540344 tcctcgtgttttggcctactcacgaaactggtc 5540312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 39154546 - 39154514
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtc 205  Q
    ||||||||||||| |||||||||||||||||||    
T  39154546 tcctcgtgttttggcctactcacgaaactggtc 39154514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 50970297 - 50970329
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtc 205  Q
    ||||||||||||| |||||||||||||||||||    
T  50970297 tcctcgtgttttggcctactcacgaaactggtc 50970329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 4812 - 4851
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  4812 tcctcgtgttttggcctactcacgaaactggtcatgccct 4851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 11656474 - 11656513
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  11656474 tcctcgtgttttggcctactcacgaaactggtcatgccct 11656513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 33742941 - 33742980
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  33742941 tcctcgtgttttgacctactcacgaaactggtcttgccct 33742980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 9178161 - 9178122
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  9178161 tcctcgtgttttggcctactcacgaaactgatcatgccct 9178122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 9928928 - 9928967
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  9928928 tcctcgtgttttgatctactcacgaaactggtcctgccct 9928967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 13225165 - 13225126
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  13225165 tcctcgtgttttggcctactcacgaaactggtcttgccct 13225126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 33328177 - 33328216
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  33328177 tcctcgtgttttggcctactcacgaaactgatcatgccct 33328216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 41681153 - 41681192
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  41681153 tcctcgtgttttggcctactcacgaaactggtcctgccct 41681192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 11656983 - 11656951
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtc 205  Q
    ||||||||||||| |||||||||||||||||||    
T  11656983 tcctcgtgttttggcctactcacgaaactggtc 11656951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 31133239 - 31133271
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtc 205  Q
    ||||||||||||| |||||||||||||||||||    
T  31133239 tcctcgtgttttgccctactcacgaaactggtc 31133271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 34541074 - 34541042
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtc 205  Q
    ||||||||||||| |||||||||||||||||||    
T  34541074 tcctcgtgttttggcctactcacgaaactggtc 34541042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 2319691 - 2319730
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  2319691 tcctcgtgttttggcctactcacgaaactggtcatgccct 2319730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 18257663 - 18257624
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  18257663 tcctcgtgttttgacctactcacgaaactggtcctgccct 18257624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 23075654 - 23075615
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  23075654 tcctcgtgttttggcctactcacgaaactggtcatgccct 23075615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 31470334 - 31470370
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgc 209  Q
    ||||||||||||| |||||||||||||||||||||||    
T  31470334 tcctcgtgttttggcctactcacgaaactggtcatgc 31470370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 1149484 - 1149523
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  1149484 tcctcgtgttttggcctactcacgaaactggtcctgccct 1149523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 10900456 - 10900417
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  10900456 tcctcgtattttggcctactcacgaaactggtcatgccct 10900417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 12935176 - 12935215
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  12935176 tcctcgtgttttggcctactcacgaaactggtcctgccct 12935215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 15828167 - 15828128
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  15828167 tcctcgtgttttggcctactcacgaaactggtcataccct 15828128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 20741119 - 20741158
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  20741119 tcctcgtgttttggcctactcacgaaactggtcctgccct 20741158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 22219879 - 22219840
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  22219879 tcctcgtgttttggcctactcacgaaactggtcctgccct 22219840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 23074018 - 23074057
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  23074018 tcctcgtgttttggcctactcacgaaactggtcctgccct 23074057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 11445513 - 11445476
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgcc 210  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  11445513 tcctcgtgttttggcctactcacgaaactggtcctgcc 11445476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 18504938 - 18504975
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgcc 210  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  18504938 tcctcgtgttttggcctactcacgaaactggtcctgcc 18504975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 10899961 - 10899997
Alignment:
Q  176 tcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  10899961 tcgtgttttggcctactcacgaaactggtcctgccct 10899997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 164210 - 164249
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  164210 tcctcgtgttttgacctactcacgaaactggtcctgccct 164249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 2865306 - 2865242
Alignment:
Q  149 aaaatatgcttaataaca-ttttcctcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||| ||||||| ||| ||||  ||||||||||||| ||||||||||||||||||| ||||||    
T  2865306 aaaataggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgccct 2865242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 18182992 - 18183028
Alignment:
Q  176 tcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||||||| ||||||||||||||||||||||||||    
T  18182992 tcgtgttttggcctactcacgaaactggtcatgccct 18183028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 5818948 - 5818987
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  5818948 tcctcgtgttttggcctactcacgaaactggtcctgccct 5818987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 5819455 - 5819416
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  5819455 tcctcgtgttttggcctactcacgaaactggtcctgccct 5819416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 14215769 - 14215730
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  14215769 tcctcgtgttttgacctactcacgaaactgatcctgccct 14215730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 15372399 - 15372360
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  15372399 tcctcgtgttttggcctactcacgaaactggtcctgccct 15372360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 18183495 - 18183456
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  18183495 tcctcgtgttttggcctactcacgaaactggtcctgccct 18183456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 19359662 - 19359623
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  19359662 tcctcgtgttttggcctactcacgaaactggtcctgccct 19359623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 24331578 - 24331617
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  24331578 tcctcgtgttttgatctactcacgaaactggtcctgccct 24331617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 4624757 - 4624716
Alignment:
Q  167 ttttcctcctcgtgttttgacctactcacgaaactggtcatg 208  Q
    ||||| |||||||||||| |||||||||||||| ||||||||    
T  4624757 ttttcgtcctcgtgttttaacctactcacgaaattggtcatg 4624716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 8647457 - 8647494
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgcc 210  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  8647457 tcctcgtgttttggcctactcacgaaactggtcctgcc 8647494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 11091046 - 11091007
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  11091046 tcctcgtgttttggcctactcacgaaactggtcatgccct 11091007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 22374339 - 22374378
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  22374339 tcctcgtgttttggcctactcacgaaactggtcatgccct 22374378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 40027162 - 40027198
Alignment:
Q  176 tcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||||||| ||||||||||||||||||||||||||    
T  40027162 tcgtgttttggcctactcacgaaactggtcatgccct 40027198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 26538605 - 26538566
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  26538605 tcctcgtgttttggcctactcacgaaactggtcctgccct 26538566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 28616632 - 28616671
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  28616632 tcctcgtgttttggcctactcacgaaactggtcttgccct 28616671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 35781189 - 35781150
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  35781189 tcctcgtgttttggcctactcacgaaaatggtcatgccct 35781150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 40815364 - 40815403
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  40815364 tcctcgtgttttggcctactcacgaaactggtcttgccct 40815403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 40815871 - 40815832
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  40815871 tcctcgtgttttggcctactcacgaaactggtaatgccct 40815832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 14432667 - 14432630
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgcc 210  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  14432667 tcctcgtgttttggcctactcatgaaactggtcatgcc 14432630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 3025485 - 3025517
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtc 205  Q
    ||||||||||||| |||||||||||||||||||    
T  3025485 tcctcgtgttttggcctactcacgaaactggtc 3025517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 18450849 - 18450881
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtc 205  Q
    ||||||||||||| |||||||||||||||||||    
T  18450849 tcctcgtgttttggcctactcacgaaactggtc 18450881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 43058858 - 43058826
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtc 205  Q
    ||||||||||||| |||||||||||||||||||    
T  43058858 tcctcgtgttttggcctactcacgaaactggtc 43058826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 34533810 - 34533846
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgc 209  Q
    ||||||||||||| |||||||||||||||||||||||    
T  34533810 tcctcgtgttttggcctactcacgaaactggtcatgc 34533846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 2658858 - 2658897
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  2658858 tcctcgtgttttggcctactcacgaaactggtcctgccct 2658897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 4478226 - 4478187
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  4478226 tcctcgtgttttggcctactcacgaaactggtcctgccct 4478187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 19590544 - 19590583
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  19590544 tcctcgtgttttggcctactcacgaaactggtcctgccct 19590583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 19830439 - 19830478
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  19830439 tcctcgtgttttggcctactcacgaaactggtcttgccct 19830478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 35289427 - 35289388
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  35289427 tcctcgtgttttggcctactcacgaaactggtcctgccct 35289388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 19591049 - 19591012
Alignment:
Q  175 ctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  19591049 ctcgtgttttggcctactcacgaaactggtcctgccct 19591012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 23952749 - 23952789
Alignment:
Q  173 tcctcgtgttttgacc-tactcacgaaactggtcatgccct 212  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  23952749 tcctcgtgttttgaccctactcacgaaattggtcatgccct 23952789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 23953255 - 23953223
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtc 205  Q
    |||||||||||||| ||||||||||||||||||    
T  23953255 tcctcgtgttttgatctactcacgaaactggtc 23953223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 37787293 - 37787261
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtc 205  Q
    ||||||||||||| |||||||||||||||||||    
T  37787293 tcctcgtgttttggcctactcacgaaactggtc 37787261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 4275890 - 4275854
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgc 209  Q
    ||||||||||||| |||||||||||||||||||||||    
T  4275890 tcctcgtgttttggcctactcacgaaactggtcatgc 4275854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 25612503 - 25612464
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  25612503 tcctcgtgttttgacctactcacgaaattggtcctgccct 25612464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 25853253 - 25853292
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  25853253 tcctcgtgttttggcctactcacgaaattggtcatgccct 25853292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 30098289 - 30098250
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  30098289 tcctcgtgttttgacatactcacgaaactggtcttgccct 30098250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 30104501 - 30104540
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  30104501 tcctcgtgttttgacctactcacgaaattggtcctgccct 30104540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 31779178 - 31779139
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  31779178 tcctcgtgttttggcctactcacgaaactggtcctgccct 31779139  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 32535489 - 32535450
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  32535489 tcctcgtgttttggcctactcacgaaactggtcctgccct 32535450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 39556103 - 39556064
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  39556103 tcctcgtgttttggcctactcacgaaactggtcctgccct 39556064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 50116935 - 50116896
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  50116935 tcctcgtgttttgacttactcacgaaattggtcatgccct 50116896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 20840579 - 20840616
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgcc 210  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  20840579 tcctcgtgttttggcctactcacgaaactggtcctgcc 20840616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 27393680 - 27393717
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgcc 210  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  27393680 tcctcgtgttttgacctactcacaaaactggtcctgcc 27393717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 39555597 - 39555634
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgcc 210  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  39555597 tcctcgtgttttggcctactcacgaaactggtcctgcc 39555634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 134199 - 134160
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  134199 tcctcgtgttttggcctactcacgaaactagtcatgccct 134160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 12234855 - 12234816
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  12234855 tcctcgtgttttggcctactcacgaaactgatcatgccct 12234816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 15523254 - 15523293
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  15523254 tcctcgtgttttggcctactcacgaaactggtcctgccct 15523293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 18764046 - 18764011
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatg 208  Q
    ||||||||||||| ||||||||||||||||||||||    
T  18764046 tcctcgtgttttggcctactcacgaaactggtcatg 18764011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 23494969 - 23494930
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  23494969 tcctcgtgttttggcctactcacgaaactggtcctgccct 23494930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 43243806 - 43243767
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  43243806 tcctcgtgttttggcctactcacgaaaatggtcatgccct 43243767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 45082950 - 45082911
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  45082950 tcctcgtgttttggcttactcacgaaactggtcatgccct 45082911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 54995593 - 54995554
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  54995593 tcctcgtgttttggcctactcacgaaactgatcatgccct 54995554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 4219576 - 4219613
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgcc 210  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  4219576 tcctcgtgttttggcctactcacgaaactggtcctgcc 4219613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 11153673 - 11153636
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgcc 210  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  11153673 tcctcgtgttttggcctactcacgaaactggtcctgcc 11153636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 22434702 - 22434665
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgcc 210  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  22434702 tcctcgtgttttggcctactcacgaaactggtcctgcc 22434665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 43281316 - 43281279
Alignment:
Q  173 tcctcgtgttttgacctactcacgaaactggtcatgcc 210  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  43281316 tcctcgtgttttggcctactcacgaaaatggtcatgcc 43281279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 25447759 - 25447723
Alignment:
Q  176 tcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  25447759 tcgtgttttggcctactcacgaaactggtcctgccct 25447723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 51021346 - 51021282
Alignment:
Q  149 aaaatatgcttaataaca-ttttcctcctcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||| ||||||| ||| ||||  ||||||||||||| ||||||||||||| ||||| ||||||    
T  51021346 aaaataggcttaattacacttttgatcctcgtgttttggcctactcacgaaattggtcctgccct 51021282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 28766 - 28730
Alignment:
Q  176 tcgtgttttgacctactcacgaaactggtcatgccct 212  Q
    |||||||||| |||||| |||||||||||||||||||    
T  28766 tcgtgttttggcctacttacgaaactggtcatgccct 28730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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