View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11917_low_4 (Length: 532)
Name: NF11917_low_4
Description: NF11917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11917_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 56189928 - 56189505
Alignment:
| Q |
1 |
ggagtcatcatctcaatcaaaacccaaagccaaatcaagcgagacttccctgtctaccgttgatctccaggaggaagccccgactctccttaat------ |
94 |
Q |
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| T |
56189928 |
ggagttatcgtctcaatcaaaacccaaagccaaatcaagcgagacttccctgtctaccgttgatctccaggaggaagccccgactctccttactccaacc |
56189829 |
T |
|
| Q |
95 |
----ttactgcattgtggcctcttgcctcccttaatggatcaaatacaaacttgttgagttttgaaaaactgttattttctgtgctgggccctaaggcta |
190 |
Q |
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| T |
56189828 |
cagtttactgcattgtggcctcttgcctcccttaatggatcaaatacaaacttgttgggttttgaaaaactgttatcttctgtgctgggccctaaggcta |
56189729 |
T |
|
| Q |
191 |
aggaaaaaggttcctttaggttgttgaaggcagatgtttctgctcagacttttgtaaagataggctttcaagctgagaagaagttgaaggaaggagatgg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56189728 |
aggaaaaaggttcctttaggttgttgaaggcagatgtttctgctcagacttttgtaaagataggctttcaagctgagaagaagttgaaggaaggagatgg |
56189629 |
T |
|
| Q |
291 |
tgttagttttgagggtttccccaaatggaggaccaagcctgagactgtgagattgcaatttgaggtgctggcaaaagtggatggtgataaagtcatccct |
390 |
Q |
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| T |
56189628 |
tgttagttttgagggtttccccaaatggaggaccaagcctgagactgtgagattgcaatttgaggtgctggcaaaagtggatggtgataaagtcatacct |
56189529 |
T |
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| Q |
391 |
gagagagtcgtgcaagtgaaccct |
414 |
Q |
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| T |
56189528 |
gagagagtcgtgcaagtgaaccct |
56189505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 413 - 522
Target Start/End: Complemental strand, 56189441 - 56189332
Alignment:
| Q |
413 |
ctattgttcagcctccgcccatccccttcgccttgtaattagtgggaaaggtttgatttttgtatactttacacaaaggaattgtagagtggattcttgg |
512 |
Q |
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| T |
56189441 |
ctattgttcagcctccgcccatccccttcgccttgtaattagtgggaaaggtttgatttttgtatactttacacaaaggaattgtagagtggattcttgg |
56189342 |
T |
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| Q |
513 |
tttgcctttg |
522 |
Q |
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|||||||||| |
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| T |
56189341 |
tttgcctttg |
56189332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 44 - 419
Target Start/End: Original strand, 2391374 - 2391759
Alignment:
| Q |
44 |
acttccctgtctaccgttgatctccaggaggaagccccgactctccttaat----------ttactgcattgtggcctcttgcctcccttaatggatcaa |
133 |
Q |
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| T |
2391374 |
acttccctgtctaccgttgatctccaggaggaagccccgaccctccttactcctacccagtttaccgcattgtggcctcttgcctctcttaatggatcaa |
2391473 |
T |
|
| Q |
134 |
atacaaacttgttgagttttgaaaaactgttattttctgtgctgggccctaaggctaaggaaaaaggttcctttaggttgttgaaggcagatgtttctgc |
233 |
Q |
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| T |
2391474 |
atgcaaacttgttgggttttgagagattgttatcttctgtgttgggtcctaaggcgaatgaaaaaggttccttcaggttgttgaaggctgatgtttctgc |
2391573 |
T |
|
| Q |
234 |
tcagacttttgtaaagataggctttcaagctgagaagaagttgaaggaaggagatggtgttagttttgagggtttccccaaatggaggaccaagcctgag |
333 |
Q |
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|||||||||||| |||||||| || ||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||||||||| |||||||| |
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| T |
2391574 |
tcagacttttgtgaagataggattccaagctgagaagaagctgaaagaaggagatgggattagttttgagggtttccctgaatggaggactaagcctgac |
2391673 |
T |
|
| Q |
334 |
actgtgagattgcaatttgaggtgctggcaaaagtggatggtgataaagtcatccctgagagagtcgtgcaagtgaaccctattgt |
419 |
Q |
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| T |
2391674 |
actgtgaggttgcattttgaggtgctggctaaagttgatggtgataaagtcatacctgagagagtcatgcaagtgaaccctgttgt |
2391759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 522
Target Start/End: Original strand, 2391824 - 2391930
Alignment:
| Q |
418 |
gttcagcctccgcccatccccttcgccttgt-aattagtgggaaaggtttgatttttgtatactttacac-aaaggaattgtagagtggattcttggttt |
515 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||| ||||||| | ||||||||||||||| ||||||| | || |
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| T |
2391824 |
gttcagcctccgcccatccccttcgccttgtaaatcagtggcaagggtttgatttttgtaaactttactcaaaaggaattgtagaggggattctcgtctt |
2391923 |
T |
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| Q |
516 |
gcctttg |
522 |
Q |
| |
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||||||| |
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| T |
2391924 |
gcctttg |
2391930 |
T |
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