View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11917_low_5 (Length: 445)

Name: NF11917_low_5
Description: NF11917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11917_low_5
NF11917_low_5
[»] chr3 (8 HSPs)
chr3 (11-426)||(53984800-53985215)
chr3 (11-335)||(53971095-53971418)
chr3 (273-313)||(53059802-53059842)
chr3 (273-312)||(37419108-37419147)
chr3 (171-241)||(53059871-53059941)
chr3 (171-241)||(53062884-53062954)
chr3 (181-241)||(37419176-37419236)
chr3 (171-227)||(53071908-53071964)
[»] chr2 (1 HSPs)
chr2 (171-241)||(6688087-6688157)
[»] chr4 (1 HSPs)
chr4 (171-240)||(34036289-34036358)
[»] chr1 (1 HSPs)
chr1 (172-237)||(16163998-16164063)
[»] chr7 (4 HSPs)
chr7 (171-212)||(19935380-19935421)
chr7 (171-212)||(19966519-19966560)
chr7 (273-313)||(31014384-31014424)
chr7 (171-240)||(31014454-31014529)


Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Original strand, 53984800 - 53985215
Alignment:
Q  11 tgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984800 tgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagac 53984899  T
Q  111 gtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatg 210  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984900 gtgtgtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatg 53984999  T
Q  211 ttgaagcacgtctagcatccacttccacttcctgccgcaacttctaacgttatggttgcagaagaatagctccatttgagttagattgtaaaacattggg 310  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53985000 ttgaagcacgtctagcatccacttccacttcctgccccaacttctaacgttatggttgcagaagaatagctccatttgagttagattgtaaaacattggg 53985099  T
Q  311 actgggagatggaggtgccatatctttatgtattataaagatatttcattagaaacccaatctcacctaacaacttttaagatttaattcatatatacaa 410  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53985100 actgggagatggaggttccatatctgtatgtattataaagatatttcattagaaacccaatcacacctaacaacttttaagatttaattcatatatacaa 53985199  T
Q  411 tatcataccactttat 426  Q
    ||||||||||||||||    
T  53985200 tatcataccactttat 53985215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 53971095 - 53971418
Alignment:
Q  11 tgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagac 110  Q
    ||||||||||| || ||||||| ||||||||| |  |||||| |||||||||||||||||| ||| || ||||  ||||||| |||||| | | ||||||    
T  53971095 tgagatgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaagac 53971194  T
Q  111 gtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggactat 209  Q
     |||  ||||||| || ||||||||||||||||||| |||||||||||| |||||| | | | ||||||||||||||||||||||||||||| |||||||    
T  53971195 atgt--agaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactat 53971292  T
Q  210 gttgaagcacgtctagcatccacttccacttcctgccgcaacttctaacgttatggttgcagaagaatagctccatttgagttagattgtaaaacattgg 309  Q
    |||  |||||||||||||||||| |||||||| |||| ||| || || | | || | |||||||||||||||||||||  |||||||||| |||  ||||    
T  53971293 gttagagcacgtctagcatccacctccacttcttgccccaaattttaccctcatagatgcagaagaatagctccattttggttagattgtgaaaagttgg 53971392  T
Q  310 gactgggagatggaggtgccatatct 335  Q
    |||||||| || || | |||||||||    
T  53971393 gactgggaaatagacgggccatatct 53971418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 53059842 - 53059802
Alignment:
Q  273 agaatagctccatttgagttagattgtaaaacattgggact 313  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  53059842 agaatagctccatttgagttagattgtaaaaaatggggact 53059802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 37419147 - 37419108
Alignment:
Q  273 agaatagctccatttgagttagattgtaaaacattgggac 312  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  37419147 agaatagctccatttgagttagattgtaaaaaatggggac 37419108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 53059941 - 53059871
Alignment:
Q  171 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc 241  Q
    |||||| ||||||| ||||||||||||| || ||| | || |||||||  |||||||||||| ||||||||    
T  53059941 aaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttctagcatccacatccacttc 53059871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 53062954 - 53062884
Alignment:
Q  171 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc 241  Q
    |||||| ||||||| ||||||||| ||| || ||||| || |||||||  |||||||||||| ||||||||    
T  53062954 aaacctcatgaatgataagatgttaaagctttggactgtgctgaagcatttctagcatccacgtccacttc 53062884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 37419236 - 37419176
Alignment:
Q  181 aatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc 241  Q
    |||| ||||||||||||| || ||||| | ||||||||  |||||||||||| ||||||||    
T  37419236 aatgataagatgttgaagctttggactgttttgaagcatttctagcatccacgtccacttc 37419176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 53071964 - 53071908
Alignment:
Q  171 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagca 227  Q
    |||||| ||||||| ||||||||||||| || ||||| ||||||||||  |||||||    
T  53071964 aaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagca 53071908  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 6688157 - 6688087
Alignment:
Q  171 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc 241  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  |||| ||||||||||||||||    
T  6688157 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttccacttc 6688087  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 34036358 - 34036289
Alignment:
Q  171 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccactt 240  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  |||||||||||| |||||||    
T  34036358 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccacctccactt 34036289  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 16163998 - 16164063
Alignment:
Q  172 aacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttcca 237  Q
    |||||||||||||| |||||||| ||| ||||| || ||||||||||| |||||||||||| ||||    
T  16163998 aacctgatgaatggcaagatgttcaagcttgggcctctgttgaagcacttctagcatccacctcca 16164063  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 19935421 - 19935380
Alignment:
Q  171 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 212  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19935421 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19935380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 19966560 - 19966519
Alignment:
Q  171 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 212  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19966560 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19966519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 31014424 - 31014384
Alignment:
Q  273 agaatagctccatttgagttagattgtaaaacattgggact 313  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  31014424 agaatagctccatttgagttagattgtaaaaaatggggact 31014384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 31014529 - 31014454
Alignment:
Q  171 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagc------acgtctagcatccacttccactt 240  Q
    |||||| ||||||| ||||||||||||| |||||||| |||||||||      || ||||||||||||||||||||    
T  31014529 aaaccttatgaatgataagatgttgaagcttgggactgtgttgaagcatttctacttctagcatccacttccactt 31014454  T

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