View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11917_low_7 (Length: 410)
Name: NF11917_low_7
Description: NF11917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11917_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 392
Target Start/End: Original strand, 32065654 - 32066047
Alignment:
| Q |
2 |
aatagatcagtagtacaattcaacaaagaatctcacaannnnnnn---gctcttgtttttacttggattgaacagctatagaagtgattttggtgttgga |
98 |
Q |
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| T |
32065654 |
aatagatcagtagtacaattcaacaaagaatctcacaattttgtttgtgctcatgtttttacttggattgaaaagctatagaagtgattttggtgttgga |
32065753 |
T |
|
| Q |
99 |
atattttcaacaacatgattgtttcagctcttttgacatctgttggaataaacactgctttatgtgttttgttctttacactttattctattttgaggaa |
198 |
Q |
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| T |
32065754 |
atattttcaacaacatgattgtttcagctcttttgacatctgttggaataaacactgctttatgtgttttgttctttacactttattctattttgaggaa |
32065853 |
T |
|
| Q |
199 |
acaaccgagtaattataaagtttatataccacgtttgttagctgaaggaatttctagnnnnnnncctttcaagttgaaacaacttataccttctcctgat |
298 |
Q |
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| T |
32065854 |
acaaccgagtaattataaagtttatataccacgtttgttagctgaaggaatttctagaaaaaaacctttcaagttgaaacaacttataccttctcctgat |
32065953 |
T |
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| Q |
299 |
tgggttgcaaaagcttggaacctttctgaggatgaactcttttcgtcctccggtttagatgctcttgtctttatgcatctcataaccttcaggt |
392 |
Q |
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| T |
32065954 |
tgggttgcaaaagcttggaacctttctgaggatgaactcttttcgtcctccggtttagatgctcttgtctttatgcatctcataaccttcaggt |
32066047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 392
Target Start/End: Original strand, 18699274 - 18699559
Alignment:
| Q |
110 |
aacatgattgtttcagctcttttgacatctgttggaataaacactgctttatgtgttttgttctttacactttattctattttgaggaaacaaccgagta |
209 |
Q |
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| T |
18699274 |
aacatgattgtgtcagctcttctaacatctgttgggatcaacacagctttgtgtgtgttattcttgacattgtattctatattgaggaagcaaccaagca |
18699373 |
T |
|
| Q |
210 |
attataaagtttatataccacgtttgttagctgaaggaatttct---agnnnnnnncctttcaagttgaaacaacttataccttctcctgattgggttgc |
306 |
Q |
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||||| ||||||| | || || ||||| | |||||||| |||| || | |||||| || || ||||||||||||| | | ||||||||| |
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| T |
18699374 |
attatgaagtttacgtgcctcgcttgttggttgaaggaacttctaagaggaggagtcatttcaattttgaaagacttataccttctgcaggttgggttgc |
18699473 |
T |
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| Q |
307 |
aaaagcttggaacctttctgaggatgaactcttttcgtcctccggtttagatgctcttgtctttatgcatctcataaccttcaggt |
392 |
Q |
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| T |
18699474 |
taaagcctggaaactctctgaggaggagctgtactcatcatcagggttagatggtgttgtctttatgcgtatcataaccttcaggt |
18699559 |
T |
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