View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11917_low_8 (Length: 390)
Name: NF11917_low_8
Description: NF11917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11917_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 32065646 - 32065319
Alignment:
| Q |
1 |
cgttgaaaattgttgtaattgatttaaactaggaagagatttgaattttgattgattaatagattgtttacaagtgtcgtgcagggataagagacaaggc |
100 |
Q |
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| T |
32065646 |
cgttgaaaattgttgtaattgatttaaactaggaaaagatttgaattttgattgattaatagattgtttacaagtgtcgtgcagggataagagacaaggc |
32065547 |
T |
|
| Q |
101 |
ttatacgctaatgaagaacaacattaacatattcgcatgttgttgtcgttattcgtggcgtttagtgattggttgtgtttgaaattgaccgggatcgtgc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
32065546 |
ttatacgctaatgaagaaca---ttaacatattcgcatgttgttgtcgttattcgtggcgtttagtgattggttatgtttgaaattgaccgggatcttgc |
32065450 |
T |
|
| Q |
201 |
cgacgcggattccacgtgtaagtgagaagtgtgcggtgtatgtctcgtacagaaacatcaagtttttaactgtaattaactgttgttaactgctactata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32065449 |
cgacgcggattccacgtgtaagtgagaagtgtgcggtgtatgtctcgtacagaaacatcaagtttttaa----------ctgttgttaactgctactata |
32065360 |
T |
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| Q |
301 |
acggtaagtattaactaacatttttaaactggatcagatac |
341 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065359 |
acggtaagtattaactaacatttttaaactggatcagatac |
32065319 |
T |
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