View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11917_low_9 (Length: 321)

Name: NF11917_low_9
Description: NF11917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11917_low_9
NF11917_low_9
[»] chr1 (3 HSPs)
chr1 (16-221)||(48505834-48506039)
chr1 (141-306)||(48505686-48505851)
chr1 (273-308)||(48504832-48504867)
[»] chr2 (4 HSPs)
chr2 (131-306)||(40927916-40928079)
chr2 (16-110)||(40927824-40927918)
chr2 (124-185)||(27409391-27409452)
chr2 (273-308)||(40928898-40928933)
[»] chr4 (2 HSPs)
chr4 (47-185)||(52628886-52629023)
chr4 (124-185)||(31979284-31979345)
[»] chr6 (1 HSPs)
chr6 (47-173)||(32090645-32090770)
[»] chr3 (1 HSPs)
chr3 (47-162)||(35091823-35091930)
[»] chr5 (1 HSPs)
chr5 (118-181)||(7649834-7649897)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 48506039 - 48505834
Alignment:
Q  16 aaagggctcgtgttcattcttgagggatctgttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattataattaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48506039 aaagggctcgtgttcattcttgagggatctgttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattataattaa 48505940  T
Q  116 gaaaattgacatgcaatagaatgagaattgaaaccctaattgattttccctttttgtttttgtgttgttagcagcttgtattttccctaattgaaaccct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  48505939 gaaaattgacatgcaatagaatgagaattgaaaccctaattgattttcccattttgtttttgtgttgttagcaggttgtattttccttaattgaaaccct 48505840  T
Q  216 aattga 221  Q
    ||||||    
T  48505839 aattga 48505834  T

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Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 141 - 306
Target Start/End: Complemental strand, 48505851 - 48505686
Alignment:
Q  141 aattgaaaccctaattgattttccctttttgtttttgtgttgttagcagcttgtattttccctaattgaaaccctaattgaatgcaatagaatgtgagat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48505851 aattgaaaccctaattgattttccctttttgtttttgtgttgttagcaggttgtatttttcctaattgaaaccctaattgaatgcaatagaatgtgagat 48505752  T
Q  241 taatggtattgtattatgatataaagtgagctcttggataaacatgataaatgcttatgtataaat 306  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48505751 taatggtattgtattatgatataaagtgggctcttggataaacatgataaatgcttatgtataaat 48505686  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 308
Target Start/End: Complemental strand, 48504867 - 48504832
Alignment:
Q  273 cttggataaacatgataaatgcttatgtataaattg 308  Q
    |||||||| |||||||||||||||||||||||||||    
T  48504867 cttggatatacatgataaatgcttatgtataaattg 48504832  T

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Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 131 - 306
Target Start/End: Original strand, 40927916 - 40928079
Alignment:
Q  131 atagaatgagaattgaaaccctaattgattttccctttttgtttttgtgttgttagcagcttgtattttccctaattgaaaccctaattgaatgcaatag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||            |||||||||||||||    
T  40927916 atagaatgagaattgaaaccctaattgattttccctttttgtttttgtgttgttagcagtttttattttccct------------aattgaatgcaatag 40928003  T
Q  231 aatgtgagattaatggtattgtattatgatataaagtgagctcttggataaacatgataaatgcttatgtataaat 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40928004 aatgtgagattaatggtattgtattatgatataaagtgagctattggataaacatgataaatgcttatgtataaat 40928079  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 40927824 - 40927918
Alignment:
Q  16 aaagggctcgtgttcattcttgagggatctgttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattata 110  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40927824 aaagggctcgtgttcattcttgagggatcttttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattata 40927918  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 27409452 - 27409391
Alignment:
Q  124 acatgcaatagaatgagaattgaaaccctaattgattttccctttttgtttttgtgttgtta 185  Q
    |||||||||||||||| |||||||||||||||||||||  |||||||||| |||||||||||    
T  27409452 acatgcaatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta 27409391  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 308
Target Start/End: Original strand, 40928898 - 40928933
Alignment:
Q  273 cttggataaacatgataaatgcttatgtataaattg 308  Q
    |||||||| |||||||||||||||||||||||||||    
T  40928898 cttggatatacatgataaatgcttatgtataaattg 40928933  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 52628886 - 52629023
Alignment:
Q  47 ttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattataattaagaaaattgacatgcaatagaatgagaattga 146  Q
    ||||||||| |||||||||||||||| |||||  |||||||||| | ||| ||| |||||||   ||| | ||||||||||||||| ||||||| |||||    
T  52628886 ttgaggtgaatttcttaaattaggttctaattatagcaaaaggggactggcattggcaattagggttagggaaattgacatgcaat-gaatgaggattga 52628984  T
Q  147 aaccctaattgattttccctttttgtttttgtgttgtta 185  Q
    || |||| ||||||||||||||||||| |||||||||||    
T  52628985 aaacctagttgattttccctttttgttattgtgttgtta 52629023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 31979284 - 31979345
Alignment:
Q  124 acatgcaatagaatgagaattgaaaccctaattgattttccctttttgtttttgtgttgtta 185  Q
    |||||||||||||||| |||||||||||||||||||||  |||||||||| |||||||||||    
T  31979284 acatgcaatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta 31979345  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 32090645 - 32090770
Alignment:
Q  47 ttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattataattaagaaaattgacatgcaatagaatgagaattga 146  Q
    ||||||||| ||||| |||||||||| |||||  |||||||||||| | ||||| |||||||  || ||| |||||||||||||||||||  | ||||||    
T  32090645 ttgaggtgattttctcaaattaggttctaattatagcaaaagggaacttgaatttgcaattaggat-aaggaaattgacatgcaatagaacaaaaattga 32090743  T
Q  147 aaccctaattgattttccctttttgtt 173  Q
    |||||||| ||||||||||||||||||    
T  32090744 aaccctaactgattttccctttttgtt 32090770  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 35091930 - 35091823
Alignment:
Q  47 ttgaggtgagtttcttaaattaggttgtaatttaagcaaaagggaattggaattagcaattataattaagaaaattgacatgcaatagaatgagaattga 146  Q
    ||||||||||||||| |||||||||| |||||  |  ||||||||| ||||||||||||||| ||        ||||||||||||||||||||||| |||    
T  35091930 ttgaggtgagtttctcaaattaggttctaattataataaaagggaactggaattagcaattagaa--------attgacatgcaatagaatgagaactga 35091839  T
Q  147 aaccctaattgatttt 162  Q
    ||||||||||||||||    
T  35091838 aaccctaattgatttt 35091823  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 7649897 - 7649834
Alignment:
Q  118 aaattgacatgcaatagaatgagaattgaaaccctaattgattttccctttttgtttttgtgtt 181  Q
    |||||| ||||||||||||||| |||||||||||  ||||||||| |||||||||| |||||||    
T  7649897 aaattggcatgcaatagaatgataattgaaaccccgattgatttttcctttttgttgttgtgtt 7649834  T

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