View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11918_low_2 (Length: 699)
Name: NF11918_low_2
Description: NF11918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11918_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 36590909 - 36591260
Alignment:
| Q |
1 |
aaacatgatcatcccagaaataggcaaagcaaatccagttccagtctccaattgtgatgtgggtgcgatctctgaatcttgtgcaacaatgtttgtcacg |
100 |
Q |
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| T |
36590909 |
aaacattatcatcccagaaataggcaaagcaaatccagttccagtctccaattgtgatgtgggtgcgatctccgaatcttgtgcaacaatgtttgtcacg |
36591008 |
T |
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| Q |
101 |
caaaacaagcctataaccattatcaacattaaaaactgaaatgcagaggcaccaaatgttgccatttccacaaaatatcttatgttatgtcactctaata |
200 |
Q |
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| T |
36591009 |
caaaacaagcctataaccattatcaacattaaaaactgaaatgcagaggcaccaaatgttgccatttccacaaaatatcttatgttatgtcactctaata |
36591108 |
T |
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| Q |
201 |
gaaaatgggactgaaaaggttatattggttgggaaaatgaattgtacaatgagagagtcaagagttgagctatatatatagaattttgttaggtgtacgt |
300 |
Q |
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| T |
36591109 |
gaaaatgggactgaaaaggttatattggttgggaaaatgaattgtacaataagagagtcaagagttgagctatatatatagaattttgttaggtgtacgt |
36591208 |
T |
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| Q |
301 |
tattataagattaagaacattattttgaagttggtaagtggtacattaaaca |
352 |
Q |
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| T |
36591209 |
tattataagattaagatcattattttgaagttggtaagtggtacattaaaca |
36591260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 379 - 625
Target Start/End: Original strand, 36591261 - 36591505
Alignment:
| Q |
379 |
gcttttggattaaggcttttatgttggattattattgctttttaggggtaatttagtttggaacgtaatatttaaatacacgttttgtccgaagcaataa |
478 |
Q |
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| T |
36591261 |
gcttttggattaaggcttttatgttggattattattgctttttaggggtaatttagtttggaacgtaatatttaaatacacgttttgtccgaagaaataa |
36591360 |
T |
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| Q |
479 |
tccaagcttgttttattaacatttaattttgatactccacaagaccattcaaatc---tagtaggtgtaaggtggcattgtgtactcaaagagcttctta |
575 |
Q |
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| T |
36591361 |
tccaagcttgttttattaac-----atattgatactccaaaagaccattcaaagctagtagtaggtgtaaggtggcattgtgtactcaaagagcttctta |
36591455 |
T |
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| Q |
576 |
cgttacactttagaggaacgatctagtgcctatatattactactaataat |
625 |
Q |
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| T |
36591456 |
cgttacactttagaggaacaatctaggccctatatattattactaataat |
36591505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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