View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11918_low_3 (Length: 577)
Name: NF11918_low_3
Description: NF11918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11918_low_3 |
 | |
|
| [»] scaffold0055 (10 HSPs) |
| |
|
| [»] scaffold0052 (12 HSPs) |
| |
|
| [»] scaffold0021 (1 HSPs) |
| |
|
| [»] scaffold0515 (1 HSPs) |
| | |
|
| [»] scaffold0306 (1 HSPs) |
| | |
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| [»] scaffold0152 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0055 (Bit Score: 555; Significance: 0; HSPs: 10)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Original strand, 41513 - 42075
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41513 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
41612 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41613 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
41712 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
41812 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41813 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
41912 |
T |
|
| Q |
415 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttctttattaatgaaaacatccttggcaaatgctttc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41913 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttcttgattaatgaaaacatccttggcaaatgctttc |
42012 |
T |
|
| Q |
515 |
gcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42013 |
gcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc |
42075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Original strand, 79762 - 80324
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79762 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
79861 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79862 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
79961 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79962 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
80061 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80062 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
80161 |
T |
|
| Q |
415 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttctttattaatgaaaacatccttggcaaatgctttc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
80162 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttcttgattaatgaaaacatccttggcaaatgctttc |
80261 |
T |
|
| Q |
515 |
gcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
80262 |
gcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc |
80324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Original strand, 50761 - 51323
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50761 |
cacagacctgttattgcctcaaacttccatggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
50860 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50861 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
50960 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50961 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
51060 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51061 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
51160 |
T |
|
| Q |
415 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttctttattaatgaaaacatccttggcaaatgctttc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51161 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttcttgattaatgaaaacatccttggcaaatgctttc |
51260 |
T |
|
| Q |
515 |
gcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51261 |
gcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc |
51323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Original strand, 69216 - 69778
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69216 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
69315 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69316 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
69415 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69416 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
69515 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69516 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
69615 |
T |
|
| Q |
415 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttctttattaatgaaaacatccttggcaaatgctttc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
69616 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttcttgattaatgaaaacatccttggcaaatgctttc |
69715 |
T |
|
| Q |
515 |
gcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
69716 |
gcagttgttcgtctttcataaatccaagaatttcacctctaactatgaaatacgaatgccccc |
69778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 15 - 574
Target Start/End: Original strand, 32199 - 32758
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32199 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccttctaagaagctggccgtggagggttacctccacatagctatttagcagg |
32298 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32299 |
ctgaggtctcgttcattaacggaattaaccagacaaatcgctccaccaactaagaacggccacgcaccaccacccatagaatcaagaaagagctctcaat |
32398 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32399 |
ctgtcaatccttactatgtctggacctggtaagtttccccttgttgagtcaaattaagccgcaggctccactcctggtggtgcctttccgtcaattcctt |
32498 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32499 |
taagtttcagccttgcgaccatactccccccggaacccaaagacttttatttctcataaggtgccaacggagtcctaaaagcaacatccgctgatccctt |
32598 |
T |
|
| Q |
415 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttctttattaatgaaaacatccttggcaaatgctttc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32599 |
gtcggcatcgtttatggttgagactaggacggtatctgattgtcttcgagcccccaactttcgttcttgattaatgaaaacatccttggcaaatgctttc |
32698 |
T |
|
| Q |
515 |
gcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgcc |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
32699 |
gcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacaaatgcc |
32758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 15 - 411
Target Start/End: Original strand, 66384 - 66780
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66384 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
66483 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66484 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
66583 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66584 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
66683 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatcc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66684 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcatatggtgccagcggagtcctaaaagcaacatccgctgatcc |
66780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 64 - 411
Target Start/End: Complemental strand, 4871 - 4524
Alignment:
| Q |
64 |
cctctaagaagctggccgtggagggttacctccacatagctatttagcaggctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4871 |
cctctaagaagctggccgtggagggttacctccacatagctatttagcaggctgaggtctcgttcgttaacggaattaactagacaaatcgctccaccaa |
4772 |
T |
|
| Q |
164 |
ctaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagtctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4771 |
ctaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagtctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagt |
4672 |
T |
|
| Q |
264 |
caaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctttaagtttcagccttgcgaccatactccccccggaacccaaagactttga |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4671 |
caaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctttaagtttcagccttgcgaccatactccccccggaacccaaagactttga |
4572 |
T |
|
| Q |
364 |
tttctcataaggtgccagcggagtcctaaaagcaacatccgctgatcc |
411 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4571 |
tttctcatatggtgccagcggagtcctaaaagcaacatccgttgatcc |
4524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #8
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 71872 - 71545
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71872 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
71773 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71772 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
71673 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71672 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
71573 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
71572 |
taagtttcagccttgcgaccatactccc |
71545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 496 - 577
Target Start/End: Original strand, 66777 - 66858
Alignment:
| Q |
496 |
atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
66777 |
atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc |
66858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 496 - 577
Target Start/End: Complemental strand, 4527 - 4446
Alignment:
| Q |
496 |
atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
4527 |
atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacaaatgccccc |
4446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 555; Significance: 0; HSPs: 12)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Original strand, 47668 - 48230
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47668 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
47767 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47768 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
47867 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47868 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
47967 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47968 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
48067 |
T |
|
| Q |
415 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttctttattaatgaaaacatccttggcaaatgctttc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48068 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttcttgattaatgaaaacatccttggcaaatgctttc |
48167 |
T |
|
| Q |
515 |
gcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48168 |
gcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc |
48230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Original strand, 6116 - 6678
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6116 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
6215 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6216 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
6315 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6316 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
6415 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6416 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
6515 |
T |
|
| Q |
415 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttctttattaatgaaaacatccttggcaaatgctttc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6516 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttcttgattaatgaaaacatccttggcaaatgctttc |
6615 |
T |
|
| Q |
515 |
gcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
6616 |
gcagttgttcgtctttcataaatccaagaatttcacctctaactatgaaatacgaatgccccc |
6678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Original strand, 25286 - 25848
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25286 |
cacagacctgttattgcctcaaacttccatggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
25385 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25386 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
25485 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25486 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
25585 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25586 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
25685 |
T |
|
| Q |
415 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttctttattaatgaaaacatccttggcaaatgctttc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25686 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttcttgattaatgaaaacatccttggcaaatgctttc |
25785 |
T |
|
| Q |
515 |
gcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25786 |
gcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc |
25848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 15 - 574
Target Start/End: Complemental strand, 63866 - 63307
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63866 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccttctaagaagctggccgtggagggttacctccacatagctatttagcagg |
63767 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
63766 |
ctgaggtctcgttcattaacggaattaaccagacaaatcgctccaccaactaagaacggccacgcaccaccacccatagaatcaagaaagagctctcaat |
63667 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
63666 |
ctgtcaatccttactatgtctggacctggtaagtttccccttgttgagtcaaattaagccgcaggctccactcctggtggtgcctttccgtcaattcctt |
63567 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
63566 |
taagtttcagccttgcgaccatactccccccggaacccaaagacttttatttctcataaggtgccaacggagtcctaaaagcaacatccgctgatccctt |
63467 |
T |
|
| Q |
415 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttctttattaatgaaaacatccttggcaaatgctttc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
63466 |
gtcggcatcgtttatggttgagactaggacggtatctgattgtcttcgagcccccaactttcgttcttgattaatgaaaacatccttggcaaatgctttc |
63367 |
T |
|
| Q |
515 |
gcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgcc |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
63366 |
gcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacaaatgcc |
63307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Complemental strand, 35544 - 35115
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35544 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
35445 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35444 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
35345 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35344 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
35245 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35244 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
35145 |
T |
|
| Q |
415 |
gtcggcatcgtttatggttgagactaggac |
444 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
35144 |
gtcggcatcgtgtatggttgagactaggac |
35115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 15 - 411
Target Start/End: Original strand, 27148 - 27544
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27148 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
27247 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27248 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
27347 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27348 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
27447 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatcc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27448 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcatatggtgccagcggagtcctaaaagcaacatccgctgatcc |
27544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 64 - 411
Target Start/End: Original strand, 79664 - 80011
Alignment:
| Q |
64 |
cctctaagaagctggccgtggagggttacctccacatagctatttagcaggctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
79664 |
cctctaagaagctggccgtggagggttacctccacatagctatttagcaggctgaggtctcgttcgttaacggaattaactagacaaatcgctccaccaa |
79763 |
T |
|
| Q |
164 |
ctaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagtctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79764 |
ctaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagtctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagt |
79863 |
T |
|
| Q |
264 |
caaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctttaagtttcagccttgcgaccatactccccccggaacccaaagactttga |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79864 |
caaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctttaagtttcagccttgcgaccatactccccccggaacccaaagactttga |
79963 |
T |
|
| Q |
364 |
tttctcataaggtgccagcggagtcctaaaagcaacatccgctgatcc |
411 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
79964 |
tttctcatatggtgccagcggagtcctaaaagcaacatccgttgatcc |
80011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 30690 - 30577
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30690 |
cacagacctgttattgcctcaaacttccatggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
30591 |
T |
|
| Q |
115 |
ctgaggtctcgttc |
128 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30590 |
ctgaggtctcgttc |
30577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 42248 - 42351
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42248 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaaaaagctggccgtggagggttacctccacatagctatttagcagg |
42347 |
T |
|
| Q |
115 |
ctga |
118 |
Q |
| |
|
|||| |
|
|
| T |
42348 |
ctga |
42351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 496 - 577
Target Start/End: Original strand, 27541 - 27622
Alignment:
| Q |
496 |
atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27541 |
atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc |
27622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 496 - 577
Target Start/End: Original strand, 80008 - 80089
Alignment:
| Q |
496 |
atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
80008 |
atccttggcaaatgctttcgcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacaaatgccccc |
80089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 517 - 577
Target Start/End: Original strand, 50763 - 50822
Alignment:
| Q |
517 |
agttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50763 |
agttgttcgtctttc-taaatccaagaatttcacctctgactatgaaatacgaatgccccc |
50822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Original strand, 45930 - 46492
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45930 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcagg |
46029 |
T |
|
| Q |
115 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46030 |
ctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaagaaagagctctcagt |
46129 |
T |
|
| Q |
215 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46130 |
ctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgcccttccgtcaattcctt |
46229 |
T |
|
| Q |
315 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46230 |
taagtttcagccttgcgaccatactccccccggaacccaaagactttgatttctcataaggtgccagcggagtcctaaaagcaacatccgctgatccctg |
46329 |
T |
|
| Q |
415 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttctttattaatgaaaacatccttggcaaatgctttc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46330 |
gtcggcatcgtttatggttgagactaggacggtatctgatcgtcttcgagcccccaactttcgttcttgattaatgaaaacatccttggcaaatgctttc |
46429 |
T |
|
| Q |
515 |
gcagttgttcgtctttcataaatccaagaatttcacatctgactatgaaatacgaatgccccc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46430 |
gcagttgttcgtctttcataaatccaagaatttcacctctgactatgaaatacgaatgccccc |
46492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 37967365 - 37967529
Alignment:
| Q |
23 |
tgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcaggctgaggtc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
37967365 |
tgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggctgtggagggttacctccacatagttatttagcaagctgaggtc |
37967464 |
T |
|
| Q |
123 |
tcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccac |
187 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37967465 |
tcgttcgttaacggaattaaccacacaaatcgctccaccaactaagaacggccatgcactaccac |
37967529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 101 - 330
Target Start/End: Original strand, 13643630 - 13643855
Alignment:
| Q |
101 |
agctatttagcaggctgaggtctcgttcgttaacggaattaaccagacaaatcgctccaccaactaagaacggccatgcaccaccacccatagaatcaag |
200 |
Q |
| |
|
||||||||| || |||||||||| ||| ||||||| ||| | |||||||||| |||||||||||| | || ||||||||||||| ||||||||||| |
|
|
| T |
13643630 |
agctatttaacaagctgaggtcttgtttgttaacgaaataatccagacaaattgctccaccaactta--acaatcatgcaccaccactaatagaatcaag |
13643727 |
T |
|
| Q |
201 |
aaagagctctcagtctgtcaatccttactatgtctggacctggtaagtttccccgtgttgagtcaaattaagccgcaggctccactcctggtggtgccct |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||| || | ||| || |||||||||| |||||||||||||||| |||| ||||||||||| ||| |||||||| |
|
|
| T |
13643728 |
aaagagctctcagtttgtcaatccttactgtgcc--gacttgataagtttccctgtgttgagtcaaattacgccgtaggctccactcatggaggtgccct |
13643825 |
T |
|
| Q |
301 |
tccgtcaattcctttaagtttcagccttgc |
330 |
Q |
| |
|
||||||||||||| || ||||||||||||| |
|
|
| T |
13643826 |
tccgtcaattcctctatgtttcagccttgc |
13643855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 14380058 - 14379964
Alignment:
| Q |
19 |
gacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14380058 |
gacctgttattgcctcaaacttccgtggtctaagcggccatagtccctctaagaagctggccgtggagggttacctccacatagctatttagcag |
14379964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 7632 - 7550
Alignment:
| Q |
9 |
gagcagcacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggtta |
91 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7632 |
gagcatcacagacctgttattgccttaaacttccgtggcctaagcggccataatccctctaagaagctggccgtggagggtta |
7550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 7642 - 7560
Alignment:
| Q |
9 |
gagcagcacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggtta |
91 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7642 |
gagcatcacagacctgttattgccttaaacttccgtggcctaagcggccataatccctctaagaagctggccgtggagggtta |
7560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 25247 - 25171
Alignment:
| Q |
15 |
cacagacctgttattgcctcaaacttccgtggcctaagcggccatagtccctctaagaagctggccgtggagggtta |
91 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25247 |
cacagacctgttattgccttaaacttccgtggcctaagcggccataatccctctaagaagctggccgtggagggtta |
25171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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