View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11918_low_4 (Length: 424)
Name: NF11918_low_4
Description: NF11918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11918_low_4 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
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| [»] chr7 (6 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
| | |
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| [»] scaffold0555 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Complemental strand, 34829892 - 34829496
Alignment:
| Q |
14 |
agagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggtta |
113 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34829892 |
agagagggtgtc-aaaaaagtaggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtactaggtttcgtcggtta |
34829794 |
T |
|
| Q |
114 |
tttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34829793 |
tttgatctagtgtctaataaactaagtacggtggctgacttggttgctcttggtggggaggttgacagagaggtgtggggttggaggagaaggttgaggc |
34829694 |
T |
|
| Q |
214 |
tgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactctgattttga |
313 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34829693 |
tgtgggaggaggagatgctagaggagtgtaggaaattacttaatggtgttgttttgcagtctgatctttctgacaggtggcaatgggactctgattttga |
34829594 |
T |
|
| Q |
314 |
tggtggttacactgtgagaggtgtctatgaacaactgacaacgcaggctgatcctcaagatgttactacgggagatcttatctggcataagcaggtgc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34829593 |
tggtggttacactgtgagaggtgtctatcaacaactgaaaactcaggctgatcctccatatggtactatgggagatcttatctggcataagcaggtgc |
34829496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 50 - 294
Target Start/End: Complemental strand, 31675369 - 31675124
Alignment:
| Q |
50 |
tactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggttatttgatctagtgtctaataaactaagtacggtggct |
149 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||| || | | |||||| |||| |||||||| ||||| ||| ||||| |||| |||||| |
|
|
| T |
31675369 |
tacttacttttggtatgataggtggcttggtgatgtccctcttcggacaaggtttagtcgtttatttgacttagtgaataacaaactgagtatggtggca |
31675270 |
T |
|
| Q |
150 |
gatttggttgctcttggtggggaggttgacggagaggt-gtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaa |
248 |
Q |
| |
|
|||||| ||| |||||| ||||| || |||| || |||| ||||||||| ||| || |||||||||| ||| || |||||||||||||| || |
|
|
| T |
31675269 |
gatttgtttgatcttgggtgggagaatggaggagggggcgtggaactggaggagacctttgtgggtgtgggaggaggagttggtagaggagtgtaggaaa |
31675170 |
T |
|
| Q |
249 |
ttacttagtggtgttgttttgcagtctgatctttctgacaggtggc |
294 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
31675169 |
ttacttaatggtgtggttttgcagtctgatatttctgacaggtggc |
31675124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 294
Target Start/End: Original strand, 31921053 - 31921296
Alignment:
| Q |
50 |
tactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggttatttgatctagtgtctaataaactaagtacggtggct |
149 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||| || | | |||||| |||| |||||||| ||| | ||| ||||| |||| |||||| |
|
|
| T |
31921053 |
tacttacttttggtatgataggtggcttggtgatgtccctcttcggacaaggtttagtcgtttatttgacttagcgaataacaaactgagtatggtggca |
31921152 |
T |
|
| Q |
150 |
gatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaat |
249 |
Q |
| |
|
||||| ||| |||||| ||||| || |||| || |||| ||||||||| ||| || |||||||||| ||| || |||||||||||||| ||| |
|
|
| T |
31921153 |
gatttt-ttgatcttgggtgggagaatggaggaggggcgtggaactggaggagacctttgtgggtgtgggaggaggagttggtagaggagtgtaggaaat |
31921251 |
T |
|
| Q |
250 |
tacttagtggtgttgttttgcagtctgatctttctgacaggtggc |
294 |
Q |
| |
|
|||||| |||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
31921252 |
tacttaatggtgtggttttgcagtctgatatttctgacaggtggc |
31921296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 40513388 - 40513662
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggt |
111 |
Q |
| |
|
|||||||| |||||||| ||||| || |||| | ||||||||| ||||||||||||||| ||||| |||||||| ||||| |||| ||||| ||||| |
|
|
| T |
40513388 |
gcagagagagtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacagatggctgggtgatgttcctttctgtatcaggttccgtcgac |
40513487 |
T |
|
| Q |
112 |
tatttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgag |
211 |
Q |
| |
|
| ||| || |||||||| |||| | || ||| | |||||| |||||||| ||||||| |||| |||| || | ||||| || |
|
|
| T |
40513488 |
tttttaatttagtgtctgataagttgagcacgatagctgatatggttgct------------------ggagaggggtggaattggcggcgtaggttaag |
40513569 |
T |
|
| Q |
212 |
gctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactc |
304 |
Q |
| |
|
| |||||||||| || ||||||||||||||||||| ||| ||| |||||| |||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
40513570 |
ggtgtgggaggaggatatgctagaggagtgtaggctgttaattaatggtgtcgttttgcagtatgatatttctgacaggtggcaatgggactc |
40513662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 301
Target Start/End: Complemental strand, 14307534 - 14307395
Alignment:
| Q |
162 |
cttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtg |
261 |
Q |
| |
|
|||||| |||||| ||| |||||||||||| ||||||||||| ||||| || |||||||| || ||| ||| |||||||||| |||||| | |
|
|
| T |
14307534 |
cttggttgggaggatgagggagaggtgtggagttggaggagacggttgtgggcatgggaggaagacatgttaggggagtgtagggctttacttgacacta |
14307435 |
T |
|
| Q |
262 |
ttgttttgcagtctgatctttctgacaggtggcaatggga |
301 |
Q |
| |
|
||||| |||||||| || |||||||| ||||||||||||| |
|
|
| T |
14307434 |
ttgttgtgcagtctaatgtttctgaccggtggcaatggga |
14307395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 53941779 - 53941717
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtgg |
74 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||||||| |||||| |||| |||||| |
|
|
| T |
53941779 |
gcagagagggtgtcgaaaagggtgggggacggaactagtactttgttttggcatgataggtgg |
53941717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 11196823 - 11196415
Alignment:
| Q |
16 |
agagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggttatt |
115 |
Q |
| |
|
||||||| |||||||| || ||||||| ||||||||||||||||| | |||| ||||||||||||||| |||||||||| ||||| ||| | ||||| |
|
|
| T |
11196823 |
agagggtatcgaaaaaggtaggggatggcactagtactttctttttgcatgataggtggcttggtgatactcctttttgtaccaggttccgttgtttatt |
11196724 |
T |
|
| Q |
116 |
tgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggctg |
215 |
Q |
| |
|
||| ||| |||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||| || |
|
|
| T |
11196723 |
tgacttagcgtctaataaactgagtacggtggctgatatggttgctattggtggggaggttgacggagaggcgtggggttggaggcgaatgttgagggtg |
11196624 |
T |
|
| Q |
216 |
tgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactctgattttgatg |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||| | || |||||||||||||||||||||||||||||| || || |
|
|
| T |
11196623 |
tgggaggaggagatgctagaggagtgtaggcaattaattaatggtgtcgttttgcagcataatatttctgacaggtggcaatgggactctgattctgctg |
11196524 |
T |
|
| Q |
316 |
gtggttacactgtgagaggtgtctatgaacaactgacaacgcaggctgatcctcaagatgttactacgggagatcttatctggcataagcaggtgccgca |
415 |
Q |
| |
|
||||||||| |||| |||| |||||| | || || || || |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11196523 |
gtggttacagtgtgggaggcgtctatcatcaccttactactcaggctgaacctccagatgttactataggagatcttatctggcataagcaggtgccgct |
11196424 |
T |
|
| Q |
416 |
aaaggtttc |
424 |
Q |
| |
|
|||||||| |
|
|
| T |
11196423 |
gaaggtttc |
11196415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 341
Target Start/End: Complemental strand, 7301150 - 7300822
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggt |
111 |
Q |
| |
|
||||||||||||| ||||| || |||||| || |||||||||||| ||| ||| |||||||| |||||||| ||||| ||| ||||| |||| | |
|
|
| T |
7301150 |
gcagagagggtgttgaaaagggtaagggatggaacgagtactttcttt-ggtttgataggtggctaggtgatgttcctttacgtacgcggtttagtcgtt |
7301052 |
T |
|
| Q |
112 |
tatttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgag |
211 |
Q |
| |
|
|||||||| ||||| |||||| | ||||||||| | || || | ||||||||| |||||| | || |||| ||| ||||||||||||| ||| | |
|
|
| T |
7301051 |
tatttgatttagtgattaataagttgagtacggtgaccaatatgttcgctcttggttgggaggaagggggtgaggcatggagttggaggagaagattgtg |
7300952 |
T |
|
| Q |
212 |
gctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactctgatttt |
311 |
Q |
| |
|
| |||||||||| |||||| ||||||||||||| || | |||| |||||||||||||||||||||| |||||||||| || | |||||| | | || |
|
|
| T |
7300951 |
ggtgtgggaggaggagatggtagaggagtgtagataacttcttaatggtgttgttttgcagtctgatgtttctgacagatgactgtgggaccccggcatt |
7300852 |
T |
|
| Q |
312 |
gatggtggttacactgtgagaggtgtctat |
341 |
Q |
| |
|
||||||||||||||| |||| ||||||||| |
|
|
| T |
7300851 |
gatggtggttacactatgagtggtgtctat |
7300822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 301
Target Start/End: Original strand, 33584185 - 33584303
Alignment:
| Q |
183 |
gaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatcttt |
282 |
Q |
| |
|
|||| |||| ||||||||||||| ||| || || ||| || | |||| |||||||||||||||| ||||||| ||||||| || ||||||||||| ||| |
|
|
| T |
33584185 |
gaggcgtggagttggaggagaagattgtgggcgtaggaagaggggatggtagaggagtgtaggcacttacttaatggtgtttttgtgcagtctgatgttt |
33584284 |
T |
|
| Q |
283 |
ctgacaggtggcaatggga |
301 |
Q |
| |
|
|||| ||||||| ||||| |
|
|
| T |
33584285 |
ttgacgggtggcagtggga |
33584303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 295
Target Start/End: Original strand, 18844478 - 18844580
Alignment:
| Q |
193 |
gttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtg |
292 |
Q |
| |
|
|||||||||| |||||| || ||||||||| ||| || | |||||||||||||| | |||| || | |||||||| ||||||| ||||||||||||| |
|
|
| T |
18844478 |
gttggaggaggaggttgtgggcgtgggaggaggagttggtggaggagtgtaggcatcttcttaatgattttgttttgtagtctgacatttctgacaggtg |
18844577 |
T |
|
| Q |
293 |
gca |
295 |
Q |
| |
|
||| |
|
|
| T |
18844578 |
gca |
18844580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 424
Target Start/End: Complemental strand, 32624548 - 32624418
Alignment:
| Q |
294 |
caatgggactctgattttgatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaggctgatcctcaagatgttactacgggagatctta |
393 |
Q |
| |
|
|||||||||||||||| || |||||| || | |||| |||| | |||| | || || ||||| || || || |||| ||| ||| || ||||||| ||| |
|
|
| T |
32624548 |
caatgggactctgattctgttggtggatatagtgtgggaggcgcctatcatcatcttacaactcaagcggaacctccagacgttcctttgggagatttta |
32624449 |
T |
|
| Q |
394 |
tctggcataagcaggtgccgcaaaaggtttc |
424 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |
|
|
| T |
32624448 |
tatggcataagcaggtgccgctgaaggtttc |
32624418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 105 - 414
Target Start/End: Original strand, 26510129 - 26510423
Alignment:
| Q |
105 |
cgtcggttatttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaa |
204 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
26510129 |
cgtcggttatttgatctagcgtctaataaactaagtacggtggctgatttggttgctcttggtgggaaggttgacggagaggcgtggggttggaggagaa |
26510228 |
T |
|
| Q |
205 |
ggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactc |
304 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26510229 |
ggttgaggatgtgggagg---------------agtgtaggcaattacttgatggtgttgttttgcagtatgatctttctgacaggtggcaatgggactc |
26510313 |
T |
|
| Q |
305 |
tgattttgatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaggctgatcctcaagatgttactacgggagatcttatctggcataag |
404 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
26510314 |
tgattttgctggtggttacactgtgagaggtttctataaacaactgacaactcagactgatcctccagatggtactatgggagatcttatctggcataag |
26510413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 12 - 299
Target Start/End: Complemental strand, 34352899 - 34352612
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggt |
111 |
Q |
| |
|
|||||||||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
34352899 |
gcagagagggtgtcgaaaaaggtaggagattgcactagtactttcttttgatatgacaggtggcttggtgatgttcctttttgtatcaggttgcgtcgcc |
34352800 |
T |
|
| Q |
112 |
tatttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgag |
211 |
Q |
| |
|
||||||| ||| ||||||||| || || || || ||| || ||||||| ||||||||||||||||||||||||| |||||| |||||| | |||||||| |
|
|
| T |
34352799 |
tatttgacttagcgtctaataagctgagcacagtagctaatatggttgcccttggtggggaggttgacggagaggcgtggggctggaggcgtaggttgag |
34352700 |
T |
|
| Q |
212 |
gctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgg |
299 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||| || |||||| ||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
34352699 |
ggtgtgggaggaggagatgctagaggagtgtaggcaattaactaatggtgtcgttttgcagtctgatatttatgacaggtggcaatgg |
34352612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 5809057 - 5808799
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggt |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||| || || |||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| | |
|
|
| T |
5809057 |
gcagagagggtgtcgaaaaaggtggggggtggcattagtacattcttttggtatgacaggtggcttggtgatgttcctttttgtactaggtatcgtcgtt |
5808958 |
T |
|
| Q |
112 |
tatttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgag |
211 |
Q |
| |
|
|||| || || |||||||||||| ||||| | ||| || || ||| || ||||||||| |||| ||||| | |||||||||||||||||||||| | |
|
|
| T |
5808957 |
tattggacttaacgtctaataaactgtgtacgatagctaatatgtttgatcctggtggggaagttggtggagaagcgtggggttggaggagaaggttggg |
5808858 |
T |
|
| Q |
212 |
gctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgc |
270 |
Q |
| |
|
| |||| ||||| |||||| || |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
5808857 |
ggtgtgcgaggaggagatgttaaaggagtgtaggcaattgcttaatggtgttgttttgc |
5808799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 45795676 - 45795288
Alignment:
| Q |
18 |
agggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggttatttg |
117 |
Q |
| |
|
||||||||||| ||||| || |||| | ||||||||| ||||||||||||||||||||| |||||||| |||||||||| || || ||||| ||||| |
|
|
| T |
45795676 |
agggtgtcgaagaaagtaggagatggctctagtacttacttttggtatgacaggtggctaggtgatgttcctttttgtatcagtttccgtcgtctattta |
45795577 |
T |
|
| Q |
118 |
atctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggctgtg |
217 |
Q |
| |
|
|| ||||||||||||| | || ||||| |||||| |||||| | ||||||| |||| |||| || | ||||| ||| |||| |
|
|
| T |
45795576 |
atttagtgtctaataagttgagcacggtagctgatatggttgat------------------ggagaggcgtggaattggcggcgtaggttaagggtgtg |
45795495 |
T |
|
| Q |
218 |
ggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactctgattttgatggt |
317 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |||| || |
|
|
| T |
45795494 |
ggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgggactccgattctgattgt |
45795395 |
T |
|
| Q |
318 |
ggttacactgtgagaggtgtctatgaacaactgacaacgcaggctgatcctcaagatgttactacgggagatcttatctggcataagcaggtgccgcaaa |
417 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| | |||| | | |||| ||||| | | | ||||| ||||| |||||||| |||||||||| | |
|
|
| T |
45795394 |
ggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctccagatgcttccattggagaccttatttggcataatcaggtgccgctta |
45795295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 424
Target Start/End: Original strand, 13867497 - 13867891
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggt |
111 |
Q |
| |
|
||||||||||||||||| ||||| || |||| ||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
13867497 |
gcagagagggtgtcgaagaaagtaggagatggttctagtacttacttttggtatgacaggtggcttggtgatgttcctttttgtatcaggttccgtcgtc |
13867596 |
T |
|
| Q |
112 |
tatttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgag |
211 |
Q |
| |
|
| ||| || ||||||||||||| | || ||||| |||||| |||||| | ||||||| |||| |||| || | ||||| || |
|
|
| T |
13867597 |
tttttaatttagtgtctaataagttgagcacggtagctgatatggttgtt------------------ggagaggcgtggaattggcggcgtaggttaag |
13867678 |
T |
|
| Q |
212 |
gctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactctgatttt |
311 |
Q |
| |
|
| |||||||||| || ||||||||||||||||||| ||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |||| | |
|
|
| T |
13867679 |
ggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgggactccgattct |
13867778 |
T |
|
| Q |
312 |
gatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaggctgatcctcaagatgttactacgggagatcttatctggcataagcaggtgc |
411 |
Q |
| |
|
||| |||||||| |||| || || |||| ||||||| ||| | |||| | | |||| ||||| | | | || || |||||||||||||| ||||||| |
|
|
| T |
13867779 |
gattacggttacacggtgatagatgcctatcaacaacttacagctcaggttcaacctccagatgcttccattggcgaccttatctggcataatcaggtgc |
13867878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 1248287 - 1248541
Alignment:
| Q |
50 |
tactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggttatttgatctagtgtctaataaactaagtacggtggct |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || | | |||||| |||| |||||||| ||| | ||||||| | ||||||||||| |
|
|
| T |
1248287 |
tacttacttttggtatgacaggtggcttggtgatgtccctcttcggacaaggtttagtcgtttatttgacttagcgactaataagttgagtacggtggca |
1248386 |
T |
|
| Q |
150 |
gatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaat |
249 |
Q |
| |
|
||| | ||| |||||| ||||| || |||| || |||| |||||||||| ||| || | |||||||| ||| || |||||||||||||||||| |
|
|
| T |
1248387 |
gatatttttgtccttggttgggagaatggaggaggggcgtggaattggaggagacctttgtgggtatgggaggaggagctgttagaggagtgtaggcaat |
1248486 |
T |
|
| Q |
250 |
tacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactc |
304 |
Q |
| |
|
|||||| ||||||||||||||| | |||| |||||||||||||||| |||||||| |
|
|
| T |
1248487 |
tacttaatggtgttgttttgcaatttgatatttctgacaggtggcactgggactc |
1248541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 50 - 294
Target Start/End: Original strand, 3544803 - 3545047
Alignment:
| Q |
50 |
tactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggttatttgatctagtgtctaataaactaagtacggtggct |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || | | |||||| | || |||||| | || | ||| ||| || |||||||||| |
|
|
| T |
3544803 |
tacttacttttggtatgacaggtggcttggtgatgtccctcttcggacaaggtttagacgtttatttaacttaacgaataacaaaatatgtacggtggca |
3544902 |
T |
|
| Q |
150 |
gatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaat |
249 |
Q |
| |
|
||| || |||||||||| ||||| || |||| || |||| ||||||||| ||| || |||||||||| ||| || |||| ||||||||||||| |
|
|
| T |
3544903 |
gatgtgtttgctcttgggtgggagagtggaggaggggcgtggaactggaggagacctttgtgggtgtgggaggaggagttggtagaagagtgtaggcaat |
3545002 |
T |
|
| Q |
250 |
tacttagtggtgttgttttgcagtctgatctttctgacaggtggc |
294 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3545003 |
tacttaatggtgttgttttgcagtctgatatttctgacaggtggc |
3545047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 52691767 - 52691665
Alignment:
| Q |
193 |
gttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtg |
292 |
Q |
| |
|
|||||||||| ||||| || ||||||||| ||| || | |||||||||||||| | |||| || | ||||||||||| |||| ||||||||||||| |
|
|
| T |
52691767 |
gttggaggaggaggttatgggcgtgggaggaggagttggtggaggagtgtaggcatcttcttaatgattttgttttgcagactgacatttctgacaggtg |
52691668 |
T |
|
| Q |
293 |
gca |
295 |
Q |
| |
|
||| |
|
|
| T |
52691667 |
gca |
52691665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 52691947 - 52691885
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtgg |
74 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||||||| |||||| |||| |||||| |
|
|
| T |
52691947 |
gcagagagggtgtcgaaaagggtgggggacggaactagtactttgttttggcatgataggtgg |
52691885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 20987639 - 20987566
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgt |
85 |
Q |
| |
|
||||||| ||||||||||| | |||||||| ||||||||||| ||||||||||| | |||| | |||||||| |
|
|
| T |
20987639 |
gcagagaaggtgtcgaaaagggagggggatggaactagtactttattttggtatgatatgtggttaggtgatgt |
20987566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 98 - 424
Target Start/End: Complemental strand, 9511172 - 9510846
Alignment:
| Q |
98 |
taggtttcgtcggttatttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttgg |
197 |
Q |
| |
|
|||||| ||||| ||||||||| || ||||||||||||| |||| || |||||| || ||| || || |||||| |||| ||||| | |||||||||| |
|
|
| T |
9511172 |
taggttccgtcgtttatttgatttaatgtctaataaactgtgtacagtagctgatatgtttgatcctgctggggaagttggtggagaagcgtggggttgg |
9511073 |
T |
|
| Q |
198 |
aggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaat |
297 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| ||||||||||||||||||| |||| |||||||||||||||| || || ||| |||||| |||| | |
|
|
| T |
9511072 |
aggagaaggttgagggtgtgggaggaggagatgttagaggagtgtaggcaattgcttaatggtgttgttttgcagcctaatatttttgacagatggcttt |
9510973 |
T |
|
| Q |
298 |
gggactctgattttgatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaggctgatcctcaagatgttactacgggagatcttatctg |
397 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9510972 |
gggactctgtttctgatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaagctgatcctcaagatgttactacgggagatcttatctg |
9510873 |
T |
|
| Q |
398 |
gcataagcaggtgccgcaaaaggtttc |
424 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
9510872 |
gcataagcaggtgccgttaaaggtttc |
9510846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 186 - 424
Target Start/End: Complemental strand, 6245429 - 6245191
Alignment:
| Q |
186 |
gtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctg |
285 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||| ||||||||| |||||||||||||| | ||||| |||||| |
|
|
| T |
6245429 |
gtgtggggttggaggagaaggttgagggtgtgggaggaggagatgttagatgagtgtaggtaattacttaatggtgttgttttgccgcctgatatttctg |
6245330 |
T |
|
| Q |
286 |
acaggtggcaatgggactctgattttgatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaggctgatcctcaagatgttactacggg |
385 |
Q |
| |
|
||| ||||| ||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
6245329 |
acaagtggctttgggattctgtttctgatggtggttacactgtgagaggtgtctatgaacaactgacaatgcaggctgttcctcaagatgttactacggg |
6245230 |
T |
|
| Q |
386 |
agatcttatctggcataagcaggtgccgcaaaaggtttc |
424 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
6245229 |
agatcttatttggcataagcaggtgccactaaaggtttc |
6245191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 6245563 - 6245481
Alignment:
| Q |
16 |
agagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaat |
98 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6245563 |
agagggtgtcgaaaaaggtgggggatggcactagtactttcttttggtatgataggtggcttggtgatgttcctttttgtaat |
6245481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 25193384 - 25193282
Alignment:
| Q |
193 |
gttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtg |
292 |
Q |
| |
|
|||||||||| |||||| || | ||||||| ||| || | |||||||||||||| | |||| || | |||||||||||||||| ||||||||||||| |
|
|
| T |
25193384 |
gttggaggaggaggttgtgggcgcgggaggaggagttggtggaggagtgtaggcatcttcttaatgattttgttttgcagtctgacatttctgacaggtg |
25193285 |
T |
|
| Q |
293 |
gca |
295 |
Q |
| |
|
||| |
|
|
| T |
25193284 |
gca |
25193282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 12340861 - 12340761
Alignment:
| Q |
195 |
tggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggc |
294 |
Q |
| |
|
||||||||||||||| || ||||||||| ||| | ||| ||||||| | || ||||||| | | ||||||||||| ||||| |||||||||||||| |
|
|
| T |
12340861 |
tggaggagaaggttgtgggagtgggaggaggagttattaggggagtgtcgccatttacttaataattttgttttgcagactgatgcttctgacaggtggc |
12340762 |
T |
|
| Q |
295 |
a |
295 |
Q |
| |
|
| |
|
|
| T |
12340761 |
a |
12340761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 424
Target Start/End: Original strand, 43516412 - 43516806
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggt |
111 |
Q |
| |
|
||||||||||||||||||||||| || |||| | ||||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
43516412 |
gcagagagggtgtcgaaaaaagtaggagatggctctagtacttacttttggtatgacaagtggcttggtgatgttcctttttgtatcaggttccgtcgtc |
43516511 |
T |
|
| Q |
112 |
tatttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgag |
211 |
Q |
| |
|
||||| || ||||||||||||| | || ||||| |||||| |||||| | ||||||| |||| ||||| || | |||||||| |
|
|
| T |
43516512 |
tatttaatttagtgtctaataagttgagcacggtagctgatatggttgat------------------ggagaggcgtggagttggcggcgtaggttgag |
43516593 |
T |
|
| Q |
212 |
gctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactctgatttt |
311 |
Q |
| |
|
| |||||||||| || |||||||||||||||||||| ||| ||| |||||| ||||||||||||||| ||||||| |||||||||||||||| ||||| | |
|
|
| T |
43516594 |
ggtgtgggaggaggatatgctagaggagtgtaggcatttaattaatggtgtcgttttgcagtctgatatttctgagaggtggcaatgggactttgattct |
43516693 |
T |
|
| Q |
312 |
gatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaggctgatcctcaagatgttactacgggagatcttatctggcataagcaggtgc |
411 |
Q |
| |
|
||| | |||||||| ||||||||||||||| |||||| |||| | |||| | | |||| ||||| ||| | |||||||||||||||||||| ||||||| |
|
|
| T |
43516694 |
gattgcggttacacggtgagaggtgtctatcaacaaccgacagctcaggttcaacctccagatgctaccattggagatcttatctggcataatcaggtgc |
43516793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 176 - 424
Target Start/End: Complemental strand, 20544396 - 20544149
Alignment:
| Q |
176 |
tgacggagaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtct |
275 |
Q |
| |
|
|||||||||| |||||||||||||| || || ||||| ||||||||| |||||| |||||||||||||| ||| ||| |||||| |||| |||| | |
|
|
| T |
20544396 |
tgacggagagatgtggggttggaggcgacggctgagggcgtgggaggaggagatgttagaggagtgtaggtttttaattaatggtgtcgttt-gcagcat |
20544298 |
T |
|
| Q |
276 |
gatctttctgacaggtggcaatgggactctgattttgatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaggctgatcctcaagatg |
375 |
Q |
| |
|
|| || |||||||||| |||||||||||||||| || ||||||||| | |||| |||| |||||| | || || ||||| ||||| || |||| ||| | |
|
|
| T |
20544297 |
aatattactgacaggtgacaatgggactctgattctgttggtggttatagtgtgggaggcgtctatcatcatcttacaactcaggcggaacctccagacg |
20544198 |
T |
|
| Q |
376 |
ttactacgggagatcttatctggcataagcaggtgccgcaaaaggtttc |
424 |
Q |
| |
|
|| || |||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
20544197 |
ttcctttgggagatcttatatggcataagcaggtgccgctgaaggtttc |
20544149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 2071813 - 2071727
Alignment:
| Q |
215 |
gtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatggga |
301 |
Q |
| |
|
||||||||| || ||| |||||| |||||| ||||||||| ||| |||||||||| | |||| |||||||||||||||| ||||| |
|
|
| T |
2071813 |
gtgggaggaggacatggtagaggggtgtagacaattacttgacggttttgttttgcattatgatatttctgacaggtggcagtggga |
2071727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 52617699 - 52617761
Alignment:
| Q |
183 |
gaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtagg |
245 |
Q |
| |
|
|||| |||| |||||| |||||| ||| || |||||||||| |||||| |||||||||||||| |
|
|
| T |
52617699 |
gaggcgtggagttggaagagaagcttgtgggtgtgggaggaagagatggtagaggagtgtagg |
52617761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 14686672 - 14686964
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggt |
111 |
Q |
| |
|
||||||||| |||| ||||| ||||||| | ||||| |||| |||||||||||||||||||||||||||| |||||||||| ||| || ||||| | |
|
|
| T |
14686672 |
gcagagaggttgtcaaaaaagatgggggacggaactagcacttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtt |
14686771 |
T |
|
| Q |
112 |
tatttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgag |
211 |
Q |
| |
|
| |||||| ||| ||||||||| | || || ||||||||| |||||| |||||||||||| |||||||||| |||||| |||||| | |||||| |
|
|
| T |
14686772 |
tgtttgatttagcatctaataaattgagcactgtggctgatatggttgactttggtggggagggtgacggagagatgtgggtctggaggcgtccgttgag |
14686871 |
T |
|
| Q |
212 |
gctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactc |
304 |
Q |
| |
|
| ||||||||||||| || |||||||||||||| ||| ||| |||||| |||||||| | || | ||||||||||||||||||||||| |
|
|
| T |
14686872 |
ggcgtgggaggatgagctgttagaggagtgtagggttttaattaatggtgtcattttgcagcataatatctctgacaggtggcaatgggactc |
14686964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 50 - 294
Target Start/End: Original strand, 14843839 - 14844083
Alignment:
| Q |
50 |
tactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggttatttgatctagtgtctaataaactaagtacggtggct |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || | | |||||| | || |||||||| || | ||| ||| | |||||||||| |
|
|
| T |
14843839 |
tacttacttttggtatgacaggtggcttggtgatgtccctcttcggacaaggtttagacgtttatttgacttaacgaataacaaaatgtgtacggtggca |
14843938 |
T |
|
| Q |
150 |
gatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaat |
249 |
Q |
| |
|
||| || |||||||||| ||||| || |||| ||||||| |||||||||| || || |||||||||| ||| || |||| ||||||||||||| |
|
|
| T |
14843939 |
gatgtgtttgctcttgggtgggagagtggaggaggggtgtggaattggaggagacctttatgggtgtgggaggaggagttggtagaagagtgtaggcaat |
14844038 |
T |
|
| Q |
250 |
tacttagtggtgttgttttgcagtctgatctttctgacaggtggc |
294 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14844039 |
tacttaatggtgttgttttgcagtctgatatttctgacaggtggc |
14844083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 301
Target Start/End: Complemental strand, 6937668 - 6937550
Alignment:
| Q |
183 |
gaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatcttt |
282 |
Q |
| |
|
||||||||| ||||||||||||| ||| || |||| | || |||||| || ||||||||||||| |||||| ||||||| | |||||| | || ||| |
|
|
| T |
6937668 |
gaggtgtggagttggaggagaagattgtgggcgtggaaagaggagatggtaaaggagtgtaggcacttacttgatggtgtttctgtgcagtgtaatgttt |
6937569 |
T |
|
| Q |
283 |
ctgacaggtggcaatggga |
301 |
Q |
| |
|
| |||||||||| ||||| |
|
|
| T |
6937568 |
tttacaggtggcagtggga |
6937550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 17110860 - 17110910
Alignment:
| Q |
69 |
aggtggcttggtgatgtccctttttgtaataggtttcgtcggttatttgat |
119 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||| || ||||||||| |
|
|
| T |
17110860 |
aggtgggttggagatgtccctttttgtgataggtttcgccgtttatttgat |
17110910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 25350698 - 25350636
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtgg |
74 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||||||| |||||| |||| |||||| |
|
|
| T |
25350698 |
gcagagagggtgtcgaaaagggtgggggacggaactagtactttgttttggcatgataggtgg |
25350636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 8384481 - 8384581
Alignment:
| Q |
195 |
tggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggc |
294 |
Q |
| |
|
||||||||||||||| || ||||||||| ||| |||||| ||||||| | | |||||||| | ||||||||||| ||| | || |||||||||||| |
|
|
| T |
8384481 |
tggaggagaaggttgtgggagtgggaggaggagttgctaggggagtgtcgcctattacttaacaattttgttttgcagactgttgttactgacaggtggc |
8384580 |
T |
|
| Q |
295 |
a |
295 |
Q |
| |
|
| |
|
|
| T |
8384581 |
a |
8384581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 87 - 424
Target Start/End: Complemental strand, 26856114 - 26855777
Alignment:
| Q |
87 |
cctttttgtaataggtttcgtcggttatttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagagg |
186 |
Q |
| |
|
|||||||||| ||| || ||||| || |||||| ||| ||||||||| | || || |||||| || |||||| |||||||||||| |||||||||| |
|
|
| T |
26856114 |
cctttttgtactagattccgtcgtttgtttgatttagcatctaataaattgagcactgtggctaatatggttgtctttggtggggagggtgacggagaga |
26856015 |
T |
|
| Q |
187 |
tgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctga |
286 |
Q |
| |
|
||||||| |||||| | ||||||| ||||||||| ||| || ||||||||||||||| ||| ||| |||||| |||||||| | || | || || |
|
|
| T |
26856014 |
tgtggggctggaggcgtccgttgagggcgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcattttgcagcataatatctccga |
26855915 |
T |
|
| Q |
287 |
caggtggcaatgggactctgattttgatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaggctgatcctcaagatgttactacggga |
386 |
Q |
| |
|
|||||||||||||||||| |||| || ||| ||||| | |||| |||| | |||| | || || ||||| || ||||| |||| ||| ||| || |||| |
|
|
| T |
26855914 |
caggtggcaatgggactcggattatggtggcggttatagtgtgggaggcgcctatcatcatcttacaactcaagctgaacctccagacgttcctttggga |
26855815 |
T |
|
| Q |
387 |
gatcttatctggcataagcaggtgccgcaaaaggtttc |
424 |
Q |
| |
|
|| ||||| ||||||||||||||||||| |||||||| |
|
|
| T |
26855814 |
gaccttatatggcataagcaggtgccgctcaaggtttc |
26855777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 20349440 - 20349367
Alignment:
| Q |
12 |
gcagagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgt |
85 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| | |||||||| |
|
|
| T |
20349440 |
gcagagagggtgtcgaaaaaggtgggggatgtaactagtactttcttttggtatgataggtggttaggtgatgt |
20349367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 19545069 - 19545121
Alignment:
| Q |
15 |
gagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatga |
67 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||||||||||||||||||| |
|
|
| T |
19545069 |
gagagggtgtcgaaaagagtgggagatggttctagtactttcttttggtatga |
19545121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 8753259 - 8753341
Alignment:
| Q |
219 |
gaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatggga |
301 |
Q |
| |
|
||||| || ||| ||| ||||||||||| |||||| ||| |||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
8753259 |
gaggaggacatggtagtggagtgtaggctcttacttgacggttttgttttgcattctgatatttctgacaggtggcagtggga |
8753341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 33821366 - 33821416
Alignment:
| Q |
195 |
tggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtagg |
245 |
Q |
| |
|
||||||||||| ||| || |||||||||| |||||||||| |||||||||| |
|
|
| T |
33821366 |
tggaggagaagattgtgggtgtgggaggaagagatgctagcggagtgtagg |
33821416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 47923988 - 47923940
Alignment:
| Q |
195 |
tggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgta |
243 |
Q |
| |
|
|||||||| |||||| || |||||||||| |||||| |||||||||||| |
|
|
| T |
47923988 |
tggaggaggaggttgtgggtgtgggaggaagagatgttagaggagtgta |
47923940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 50 - 294
Target Start/End: Original strand, 34311 - 34555
Alignment:
| Q |
50 |
tactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggttatttgatctagtgtctaataaactaagtacggtggct |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || | | |||||| | | |||||| | || | ||| |||||| |||||||||| |
|
|
| T |
34311 |
tacttacttttggtatgacaggtggcttggtgatgtccctcttcggacaaggtttagaagtttatttcacttaacgaataacaaactatgtacggtggca |
34410 |
T |
|
| Q |
150 |
gatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaat |
249 |
Q |
| |
|
||| || |||||||||| |||||| || |||| || |||| ||||||||| ||| || |||||||||| ||| || |||||||||||||||||| |
|
|
| T |
34411 |
gatgtgtttgctcttgggtgggagggtggaggaggggcgtggaactggaggagacctttgtgggtgtgggaggaggagttggtagaggagtgtaggcaat |
34510 |
T |
|
| Q |
250 |
tacttagtggtgttgttttgcagtctgatctttctgacaggtggc |
294 |
Q |
| |
|
|||||| |||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
34511 |
tacttaatggtgttgttttacagtctgatatttctgacaggtggc |
34555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 50 - 294
Target Start/End: Complemental strand, 476651 - 476407
Alignment:
| Q |
50 |
tactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggttatttgatctagtgtctaataaactaagtacggtggct |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || | | |||||| | || |||||||| || | ||| ||||| |||||||||| |
|
|
| T |
476651 |
tacttacttttggtatgacaggtggcttggtgatgtccctcttcgaacaaggtttagacgtttatttgacttaacgaataacaaactgtgtacggtggca |
476552 |
T |
|
| Q |
150 |
gatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaat |
249 |
Q |
| |
|
||| || |||||||||| ||||| || |||| || |||| | ||||||| ||| || |||||||||| ||| || |||||||||||||||||| |
|
|
| T |
476551 |
gatgtgtttgctcttgggtgggagagtggaggaggggcgtggaactagaggagacctttgtgggtgtgggaggaggagttggtagaggagtgtaggcaat |
476452 |
T |
|
| Q |
250 |
tacttagtggtgttgttttgcagtctgatctttctgacaggtggc |
294 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
476451 |
tacttaatggtgttgttttgcagtctgatatttctgacaggtggc |
476407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 336
Target Start/End: Complemental strand, 16907726 - 16907438
Alignment:
| Q |
48 |
agtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggttatttgatctagtgtctaataaactaagtacggtgg |
147 |
Q |
| |
|
||||| |||||||||||||| |||||| | | |||||| ||||| ||| ||||| | || ||||||||| ||| | ||||||| | | |||||| |
|
|
| T |
16907726 |
agtacattcttttggtatgataggtggttagatgatgttcctttacgtacatggtttagccgtttatttgatttagcgactaataagttgtgagcggtgg |
16907627 |
T |
|
| Q |
148 |
ctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggca |
247 |
Q |
| |
|
||||| || |||||||||| ||||||||| || |||| |||| |||||||||||| ||| || ||||||||| ||| || ||| ||||||||| || |
|
|
| T |
16907626 |
ctgatatgtgtgctcttggttgggaggttggaggtgaggcgtggagttggaggagaatattgtgggcgtgggaggaggagttgatagtggagtgtagtca |
16907527 |
T |
|
| Q |
248 |
attacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactctgattttgatggtggttacactgtgagaggtg |
336 |
Q |
| |
|
| ||| | ||||||||||||| ||||| || ||| |||||||| |||||| | || ||||||| |||||||| ||||| |||| |
|
|
| T |
16907526 |
tcttgttaataatgttgttttgcagactgatgttcttgaaaggtggcagtgggacccagacattgatgggggttacacagtgagcggtg |
16907438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 380374 - 380060
Alignment:
| Q |
15 |
gagagggtgtcgaaaaaagtgggggatgacactagtactttcttttggtatgacaggtggcttggtgatgtccctttttgtaataggtttcgtcggttat |
114 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||| || ||||| ||||| ||| ||||| |||| |||| |
|
|
| T |
380374 |
gagagggtgtcgaagcgagtgggggatggttctagtactttcttttggcacgacaggtggctaggcgatgttcctttacgtacacggtttagtcgtttat |
380275 |
T |
|
| Q |
115 |
ttgatctagtgtctaataaactaagtacggtggctgatttggttgctcttggtggggaggttgacggagaggtgtggggttggaggagaaggttgaggct |
214 |
Q |
| |
|
||||| ||| | ||||||| | | ||||| |||||| || ||||| | ||| |||||||| |||| | |||| ||| | |||| || ||| || |
|
|
| T |
380274 |
ttgatttagcgactaataagttgtgcacggtcgctgatatgtttgctttaggttgggaggttagaggaggagcgtggagttcgcggaggagattgtgggc |
380175 |
T |
|
| Q |
215 |
gtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggcaatgggactctgattttgat |
314 |
Q |
| |
|
||||||||| ||| || | ||||||||||| || | |||| | ||||||||||||| || || || |||||||||||| |||||| |||| ||| | |
|
|
| T |
380174 |
gtgggaggaggagttggtcgaggagtgtagtcacgttcttaataatgttgttttgcagactaatgttcttgacaggtggcagtgggaccctgacattgtt |
380075 |
T |
|
| Q |
315 |
ggtggttacactgtg |
329 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
380074 |
gggggttatactgtg |
380060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 42039545 - 42039611
Alignment:
| Q |
188 |
gtggggttggaggagaaggttgaggctgtgggaggatgagatgctagaggagtgtaggcaattactt |
254 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| || || ||| ||||||||||||||||||||||| |
|
|
| T |
42039545 |
gtggagttggaggagaaggttgtgggtgtgggaagaagaaatgttagaggagtgtaggcaattactt |
42039611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 7942 - 7862
Alignment:
| Q |
214 |
tgtgggaggatgagatgctagaggagtgtaggcaattacttagtggtgttgttttgcagtctgatctttctgacaggtggc |
294 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7942 |
tgtgggaggaggagttggtagaggagtgtaggcaattacttaatgttgttgttttgcagtctgatatttctgacaggtggc |
7862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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