View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11918_low_5 (Length: 262)
Name: NF11918_low_5
Description: NF11918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11918_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 20889658 - 20889755
Alignment:
| Q |
115 |
ctcacttcgacggttggatttccacggctatcgaagatctgacgagctttaacaatcttgatcgtaaccaccattgttgtaagaatcaaaatctcgtg |
212 |
Q |
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| T |
20889658 |
ctcacttcgacggttggatttccacggctatcgaagatctgacgagctttaacaatcttgatcgtaaccaccattgttgtaagaatcaaaatctcgtg |
20889755 |
T |
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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 20889570 - 20889625
Alignment:
| Q |
19 |
taagataataataatataattttttcttcattttcccgctcattttcttagcttcc |
74 |
Q |
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| T |
20889570 |
taagataataataatataattttttcttcattttcccgctcattttcttagcttcc |
20889625 |
T |
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