View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11918_low_6 (Length: 241)
Name: NF11918_low_6
Description: NF11918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11918_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 38280350 - 38280209
Alignment:
| Q |
19 |
tttaggcccattcttgtacggatcattgttgattcttgtgctctttggtctgattcaggtatttgctctctatttagagtgtaattaattggcaaattag |
118 |
Q |
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| T |
38280350 |
tttaggcccattcttgtacggatcattgttgattcttgtgctctttggtctgattcaggtatttgctctctatttagagtgtaattaattggcaaattag |
38280251 |
T |
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| Q |
119 |
cccttataatagtgattttgatatctaatatcagtttgatcc |
160 |
Q |
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| T |
38280250 |
cccttataatagtgattttgatatctaatatcagtttgatcc |
38280209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 38271676 - 38271453
Alignment:
| Q |
19 |
tttaggcccattcttgtacggatcattgttgattcttgtgctctttggtctgattcaggtattt-gctctctatttagagtgtaattaattggcaaatta |
117 |
Q |
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| T |
38271676 |
tttagaccgattcttgttgggagctttgttggttcttattctctttgctctgattctggtattttgctctctatttagagtgtaattaattggcaaatta |
38271577 |
T |
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| Q |
118 |
gcccttataatagtgattttgatatctaatatcagtttgatccnnnnnnnnnnnnngtaggttctgtttcaattggttaagttgtcacatttgttctttg |
217 |
Q |
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| T |
38271576 |
gcccttataatagtgattttgatatctaataacagtttgatcctttttttgttgttgtaggttttatttccattggataagttgtcacatttgatctatg |
38271477 |
T |
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| Q |
218 |
ggtgccttggagttattatttttt |
241 |
Q |
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| T |
38271476 |
ggtgtcttggagctattatatttt |
38271453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 241
Target Start/End: Complemental strand, 38275402 - 38275204
Alignment:
| Q |
44 |
ttgttgattcttgtgctctttggtctgattcaggtattt-gctctctatttagagtgtaattaattggcaaattagcccttataatagtgattttgatat |
142 |
Q |
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| T |
38275402 |
ttgttggttcttattctctttgctctgattctggtatttcgctctctatttagagtataattaattagcaaattttcccttatagtagtgcttttgatat |
38275303 |
T |
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| Q |
143 |
ctaatatcagtttgatccnnnnnnnnnnnnngtaggttctgtttcaattggttaagttgtcacatttgttctttgggtgccttggagttattatttttt |
241 |
Q |
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| T |
38275302 |
ctaataacagtttgatcctttttttgttgttgtaggttcagtttccattggataagttgtcacatgtgatctatgggtgtcttgtagctattatatttt |
38275204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 38313161 - 38313115
Alignment:
| Q |
100 |
taattaattggcaaattagcccttataatagtgattttgatatctaa |
146 |
Q |
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| T |
38313161 |
taataaattggcaaattagcccttgtaatagtgattttgatatctaa |
38313115 |
T |
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