View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11918_low_7 (Length: 229)
Name: NF11918_low_7
Description: NF11918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11918_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 33381171 - 33381277
Alignment:
| Q |
15 |
gtgtacatattaacagtgttcctttgaagtttgaaagtagccatgcaaaatannnnnnnctacatgtttattttgttctcataatataatatgttgcaag |
114 |
Q |
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| T |
33381171 |
gtgtacatatcaacagttttcctttgaagtttgaaagtagtcatgcaaaatattttcttctgcatgtttattttgttctcataatataatatgttgcaag |
33381270 |
T |
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| Q |
115 |
ttatttc |
121 |
Q |
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| T |
33381271 |
ttatttc |
33381277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 33399506 - 33399713
Alignment:
| Q |
16 |
tgtacatattaacagtgttcctttgaagtttgaaagtagccatgcaaaatannnnnnn-----ctacatgtttattttgttctcataatataatatgt-- |
108 |
Q |
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||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
33399506 |
tgtacatattaacggtgttcctttgaagtttgaaagtagtcaggcaaaatatatttttaatttctacatgtttattttgttctaataatataatatgtat |
33399605 |
T |
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| Q |
109 |
----tgcaagttatttcnnnnnnnnnnnnnnnnntaatatgttgtaagttcaattcgattcttatcttttcttgtatattttaatcaatccttatattta |
204 |
Q |
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||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33399606 |
atgttgcaagttatttcaaaaaataaaatgaaaataatatgttgcaagttcaatccgattcttatcttttcttgtatattttaatcaatccttatcttta |
33399705 |
T |
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| Q |
205 |
tcgacgtg |
212 |
Q |
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| T |
33399706 |
tcgacgtg |
33399713 |
T |
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