View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11919_high_2 (Length: 534)

Name: NF11919_high_2
Description: NF11919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11919_high_2
NF11919_high_2
[»] chr4 (14 HSPs)
chr4 (18-424)||(7259421-7259833)
chr4 (25-79)||(47006102-47006156)
chr4 (25-79)||(37061972-37062026)
chr4 (17-75)||(44434036-44434094)
chr4 (25-79)||(41580318-41580372)
chr4 (30-79)||(35196743-35196792)
chr4 (29-77)||(8037894-8037942)
chr4 (18-49)||(6334936-6334967)
chr4 (18-49)||(6335886-6335917)
chr4 (17-75)||(1913958-1914016)
chr4 (21-75)||(35415735-35415789)
chr4 (35-80)||(32439897-32439942)
chr4 (19-75)||(4965121-4965177)
chr4 (18-70)||(24993307-24993359)
[»] chr1 (10 HSPs)
chr1 (21-79)||(35097242-35097300)
chr1 (20-96)||(40491130-40491208)
chr1 (25-95)||(16910033-16910105)
chr1 (42-81)||(11982200-11982239)
chr1 (25-75)||(11330953-11331003)
chr1 (25-75)||(11488974-11489024)
chr1 (21-106)||(10423042-10423129)
chr1 (26-78)||(32686552-32686604)
chr1 (29-98)||(42048457-42048528)
chr1 (19-79)||(21781228-21781288)
[»] chr7 (6 HSPs)
chr7 (17-95)||(44972044-44972122)
chr7 (19-95)||(26387654-26387732)
chr7 (25-78)||(3265331-3265384)
chr7 (17-79)||(47230596-47230659)
chr7 (25-79)||(44184003-44184057)
chr7 (19-79)||(37257628-37257688)
[»] chr3 (9 HSPs)
chr3 (19-95)||(35936688-35936766)
chr3 (19-95)||(38207310-38207388)
chr3 (19-70)||(12010821-12010872)
chr3 (29-79)||(35570594-35570644)
chr3 (18-70)||(49828200-49828252)
chr3 (19-98)||(31351413-31351492)
chr3 (26-75)||(1815256-1815305)
chr3 (25-78)||(51460164-51460217)
chr3 (15-75)||(1272079-1272139)
[»] chr8 (4 HSPs)
chr8 (19-102)||(34142671-34142756)
chr8 (17-79)||(9280585-9280647)
chr8 (25-79)||(25487548-25487602)
chr8 (18-74)||(24585598-24585654)
[»] chr5 (6 HSPs)
chr5 (15-95)||(26995199-26995279)
chr5 (29-99)||(32746351-32746423)
chr5 (25-79)||(24229421-24229475)
chr5 (29-74)||(37866930-37866975)
chr5 (19-79)||(20906283-20906343)
chr5 (19-79)||(36880009-36880069)
[»] chr6 (3 HSPs)
chr6 (29-79)||(18688966-18689016)
chr6 (16-79)||(10663903-10663965)
chr6 (25-78)||(19636450-19636503)
[»] scaffold0061 (1 HSPs)
scaffold0061 (19-70)||(63620-63671)
[»] scaffold0017 (1 HSPs)
scaffold0017 (19-70)||(134961-135012)
[»] chr2 (2 HSPs)
chr2 (25-79)||(19064298-19064352)
chr2 (18-96)||(37141197-37141277)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 7259833 - 7259421
Alignment:
Q  18 gaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgtgcaaaattattttaaaccgttaatccacttgcatt 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  7259833 gaattgacacgtaaattaaaaatattaattgatatgacaattctaaatgttttgattgattgcgtgcaaaattgttttaaaccgttaatccacttgcatt 7259734  T
Q  118 aaactccggaaaataaatagtttctagctgataannnnnnnnnnnnnnnnnaaatagcatgagcaacccggggatttgatataagtttggtgtaggaggt 217  Q
    |||||||||||||||||||||||| |||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7259733 aaactccggaaaataaatagtttccagctgataatttttatttttatttttaaatagcatgagcaacccggggatttgatataagtttggtgtaggaggt 7259634  T
Q  218 aaattttgtgtatagaacattgtnnnnnnnnnnnnnn--------ctcaacaatatctgaaaaacattgacttcccaatggtaaaatttaaacattgtcc 309  Q
    |||||||||||||||||||||||                      |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  7259633 aaattttgtgtatagaacattgtaaaaaaaaaaaaaaaaaaaaaactcaacaatatctggaa--cattgacttcccaatggtaaaatttaaacattgtcc 7259536  T
Q  310 tttttcttatgttcgattaattctctcttctgtttatttgatcggttttatccctcattgtttcttatgttttgattggtgattctttaatgattatttt 409  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7259535 tttttcatatgttcgattaattctctcttctgtttatttgattggttttatccctcattgtttcttatgttttgattggtgattctctaatgattatttt 7259436  T
Q  410 gatcgttgatcccca 424  Q
    |||||||||||||||    
T  7259435 gatcgttgatcccca 7259421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 47006156 - 47006102
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||    
T  47006156 cacataaattaaaaacattagttgatatgacaattctaaatattttgattggttg 47006102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 37062026 - 37061972
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||||||||||||  |||||||||| |||||||||||||| |||||||||||||    
T  37062026 cacataaattaaaatcattaattgatgtgacaattctaaatgttttgattggttg 37061972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 44434036 - 44434094
Alignment:
Q  17 agaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 75  Q
    ||||||||||||||||||||||||||| ||| || |||||| ||||||| |||||||||    
T  44434036 agaattgacacataaattaaaaatatttattaatgtgacaactctaaatgttttgattg 44434094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 41580318 - 41580372
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||||||||| || |||||||||||||||||||||  ||| |||||||||||||    
T  41580318 cacataaattacaattattaattgatatgacaattcagaatgttttgattggttg 41580372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 35196743 - 35196792
Alignment:
Q  30 aaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    |||||||||| |||||||||| || ||||||||||| |||||||||||||    
T  35196743 aaattaaaaacattaattgatgtgtcaattctaaatgttttgattggttg 35196792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 8037894 - 8037942
Alignment:
Q  29 taaattaaaaatattaattgatatgacaattctaaattttttgattggt 77  Q
    |||||||||||||||||||||| || | ||||||||| |||||||||||    
T  8037894 taaattaaaaatattaattgatgtggcgattctaaatattttgattggt 8037942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 6334936 - 6334967
Alignment:
Q  18 gaattgacacataaattaaaaatattaattga 49  Q
    ||||||||||||||||||||||||||||||||    
T  6334936 gaattgacacataaattaaaaatattaattga 6334967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 6335886 - 6335917
Alignment:
Q  18 gaattgacacataaattaaaaatattaattga 49  Q
    ||||||||||||||||||||||||||||||||    
T  6335886 gaattgacacataaattaaaaatattaattga 6335917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 1914016 - 1913958
Alignment:
Q  17 agaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 75  Q
    ||||||| | ||||||||||||| || ||||||| |||||||| ||||| |||||||||    
T  1914016 agaattgccgcataaattaaaaacataaattgatgtgacaattataaatattttgattg 1913958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 35415735 - 35415789
Alignment:
Q  21 ttgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 75  Q
    ||||||| ||||||||||| |||||||||| |||| ||||||||| || ||||||    
T  35415735 ttgacacgtaaattaaaaacattaattgatgtgacgattctaaatgttatgattg 35415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 32439942 - 32439897
Alignment:
Q  35 aaaaatattaattgatatgacaattctaaattttttgattggttgc 80  Q
    |||||||||||||||| ||| |||||||||| ||||||||| ||||    
T  32439942 aaaaatattaattgatgtgataattctaaatattttgattgattgc 32439897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 4965177 - 4965121
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 75  Q
    ||||| ||| |||||||| ||||||||||||| |||| ||| ||||| |||||||||    
T  4965177 aattgccacgtaaattaacaatattaattgatgtgacgattataaatattttgattg 4965121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 24993307 - 24993359
Alignment:
Q  18 gaattgacacataaattaaaaatattaattgatatgacaattctaaatttttt 70  Q
    |||||| ||| ||||||||||| ||||| |||| |||||||||||||| ||||    
T  24993307 gaattgccacgtaaattaaaaacattaaatgatgtgacaattctaaatgtttt 24993359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 35097242 - 35097300
Alignment:
Q  21 ttgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  35097242 ttgacacataaattaaaaatattaattgatatgtcaattttaaatattttgattggttg 35097300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 40491208 - 40491130
Alignment:
Q  20 attgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggt--tgcgtgcaaaattatttta 96  Q
    |||| ||||||||||||||| |||| ||||||||| |||| ||||| |||||||||||  || ||||||||||||||||    
T  40491208 attgtcacataaattaaaaacattatttgatatgataattttaaatattttgattggttgtgtgtgcaaaattatttta 40491130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 16910105 - 16910033
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggt--tgcgtgcaaaattatttt 95  Q
    ||||||||||||||||||||||| || |||| ||| ||||| ||||||||| |  ||||||||||||||||||    
T  16910105 cacataaattaaaaatattaatttatgtgacgattataaatattttgattgattgtgcgtgcaaaattatttt 16910033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 11982239 - 11982200
Alignment:
Q  42 ttaattgatatgacaattctaaattttttgattggttgcg 81  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  11982239 ttaattgatatgacaattctaaatgttttgattggttgcg 11982200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 11331003 - 11330953
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattg 75  Q
    ||||||||||||||  |||||||||||||||||||| |||| |||||||||    
T  11331003 cacataaattaaaatcattaattgatatgacaattcaaaatattttgattg 11330953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 11489024 - 11488974
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattg 75  Q
    ||||||||||||||  |||||||||||||||||||| |||| |||||||||    
T  11489024 cacataaattaaaatcattaattgatatgacaattcaaaatattttgattg 11488974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 10423042 - 10423129
Alignment:
Q  21 ttgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg--cgtgcaaaattattttaaaccgttaat 106  Q
    ||||||| |||||||||| ||||||||||  || ||||||||||| ||||||||| |||  ||||||||  | |||||||| ||||||    
T  10423042 ttgacacgtaaattaaaattattaattgacgtggcaattctaaatgttttgattgattgcacgtgcaaatgtgttttaaacggttaat 10423129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 32686552 - 32686604
Alignment:
Q  26 acataaattaaaaatattaattgatatgacaattctaaattttttgattggtt 78  Q
    ||||| |||| ||||||||||||||||| ||||||||||  ||||||||||||    
T  32686552 acatatattagaaatattaattgatatggcaattctaaaagttttgattggtt 32686604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 42048528 - 42048457
Alignment:
Q  29 taaattaaaaatattaattgatatgacaattctaaattttttgattggttg--cgtgcaaaattattttaaa 98  Q
    |||||| ||||||||||||||| |||| ||||||||| | ||||||| |||   ||||||||||||||||||    
T  42048528 taaatttaaaatattaattgatgtgactattctaaatgtcttgattgattgtatgtgcaaaattattttaaa 42048457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 21781228 - 21781288
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||| ||| |||||||||||||||| ||||| | || ||||||||| ||||||| |||||    
T  21781228 aattgccacgtaaattaaaaatattatttgatgttacgattctaaatgttttgatcggttg 21781288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 44972122 - 44972044
Alignment:
Q  17 agaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgtgcaaaattatttt 95  Q
    |||||||  ||||||||||||||||||||||||| || ||||||| ||| ||||||||||||| ||| |||||| ||||    
T  44972122 agaattgctacataaattaaaaatattaattgatgtggcaattctgaatattttgattggttgagtgaaaaattgtttt 44972044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 26387654 - 26387732
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggt--tgcgtgcaaaattatttt 95  Q
    ||||| |||||||| |||||| |||||||||| |||||||| ||||| |||||||||||  || |||||||||||||||    
T  26387654 aattgccacataaactaaaaacattaattgatgtgacaattttaaatgttttgattggttgtgtgtgcaaaattatttt 26387732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 3265331 - 3265384
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggtt 78  Q
    ||||||||||||||| |||||||||| |||||||||||||| |||| |||||||    
T  3265331 cacataaattaaaaacattaattgatgtgacaattctaaatattttaattggtt 3265384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 47230596 - 47230659
Alignment:
Q  17 agaattgacacataaattaaaaatattaattgatatgacaattctaaat-tttttgattggttg 79  Q
    ||||||| |||||||||||||||  |||||| || |||||||||||||| ||||||||||||||    
T  47230596 agaattgtcacataaattaaaaactttaattaatgtgacaattctaaatatttttgattggttg 47230659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 44184003 - 44184057
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||||||||||||  |||||||||| |||||||||  ||| |||||||||||||    
T  44184003 cacataaattaaaatcattaattgatgtgacaattcagaatgttttgattggttg 44184057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 37257628 - 37257688
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||| ||||||||||||||| |||||||||| ||   ||||| ||| |||||||||||||    
T  37257628 aattgtcacataaattaaaaacattaattgatgtggggattctgaatgttttgattggttg 37257688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 35936766 - 35936688
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcg--tgcaaaattatttt 95  Q
    ||||| |||||||||||||||||||||||||| ||  |||||||||| |||||||| |||| |  ||||||||||||||    
T  35936766 aattgtcacataaattaaaaatattaattgatttggtaattctaaatattttgatttgttgtgtatgcaaaattatttt 35936688  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 38207310 - 38207388
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggt--tgcgtgcaaaattatttt 95  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||| |||| ||||||  || ||||||| |||||||    
T  38207310 aattgccacataaattaaaaacattaattgatgtgacaattctaaatgtttttattggtcgtgtgtgcaaagttatttt 38207388  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 12010821 - 12010872
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaatttttt 70  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  12010821 aattgtcacgtaaattaaaaatattaattcatatgacaattctaaatgtttt 12010872  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 35570644 - 35570594
Alignment:
Q  29 taaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    |||||||||||||||||||||| || ||||| ||||| |||||||||||||    
T  35570644 taaattaaaaatattaattgatgtggcaattttaaatgttttgattggttg 35570594  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 49828200 - 49828252
Alignment:
Q  18 gaattgacacataaattaaaaatattaattgatatgacaattctaaatttttt 70  Q
    |||||| ||| ||||||||||| ||||||| ||||||||||||||||| ||||    
T  49828200 gaattgccacgtaaattaaaaacattaattcatatgacaattctaaatgtttt 49828252  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 31351492 - 31351413
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgtgcaaaattattttaaa 98  Q
    ||||| ||| ||||||||||| |||| ||| | |  ||||| ||||| ||||||||||||| |||||||||| |||||||    
T  31351492 aattgccacttaaattaaaaacattacttgttgtagcaattttaaatgttttgattggttgtgtgcaaaattgttttaaa 31351413  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 1815256 - 1815305
Alignment:
Q  26 acataaattaaaaatattaattgatatgacaattctaaattttttgattg 75  Q
    |||||||||||||||||||||| || || | ||||||||| |||||||||    
T  1815256 acataaattaaaaatattaattaatgtggcgattctaaatattttgattg 1815305  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 51460164 - 51460217
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggtt 78  Q
    ||||||||||||||  |||||||||| |||||||||  ||| ||||||||||||    
T  51460164 cacataaattaaaatcattaattgatgtgacaattcagaatgttttgattggtt 51460217  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 1272079 - 1272139
Alignment:
Q  15 tcagaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 75  Q
    ||||||||| |  |||||||| ||| ||||||||||||  ||||||||||| |||||||||    
T  1272079 tcagaattgccgtataaattagaaacattaattgatatttcaattctaaatattttgattg 1272139  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 34142756 - 34142671
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgc--gtgcaaaattattttaaaccgt 102  Q
    ||||| ||||||||||||||||||||||| ||||  | ||||||||| ||||||||| ||||   |||||||||||||| ||||||    
T  34142756 aattgccacataaattaaaaatattaatttatatagcgattctaaatgttttgattgattgctaatgcaaaattattttgaaccgt 34142671  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 9280647 - 9280585
Alignment:
Q  17 agaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||||| || | ||||||||||||||||||||| |||||||| ||||| ||| ||| |||||    
T  9280647 agaattgtcatacaaattaaaaatattaattgatgtgacaattttaaatgtttagataggttg 9280585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 25487548 - 25487602
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||||||||||||  |||||||||| |||||||||  ||| |||||||||||||    
T  25487548 cacataaattaaaatcattaattgatgtgacaattcagaatgttttgattggttg 25487602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 24585598 - 24585654
Alignment:
Q  18 gaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgatt 74  Q
    |||||| ||| ||||||||||| |||||||||| |  ||||||||||| ||||||||    
T  24585598 gaattgtcacgtaaattaaaaacattaattgatttagcaattctaaatgttttgatt 24585654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 26995199 - 26995279
Alignment:
Q  15 tcagaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgtgcaaaattatttt 95  Q
    ||||||||  ||||||||||||||||||||||||   |||| ||| ||||| |||| |||| ||| |||||||||||||||    
T  26995199 tcagaattctcacataaattaaaaatattaattggcgtgacgattttaaatattttaattgattgtgtgcaaaattatttt 26995279  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 32746351 - 32746423
Alignment:
Q  29 taaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgtg--caaaattattttaaac 99  Q
    |||||||||||||||||||||| ||  |||| ||||| ||||||||||||| |||  ||||||| ||||||||    
T  32746351 taaattaaaaatattaattgatgtggaaattataaatgttttgattggttgtgtgtacaaaattgttttaaac 32746423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 24229475 - 24229421
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||||||||||||  ||||||||| ||||||||||  ||| |||||||||||||    
T  24229475 cacataaattaaaatcattaattgaaatgacaattcagaatattttgattggttg 24229421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 37866975 - 37866930
Alignment:
Q  29 taaattaaaaatattaattgatatgacaattctaaattttttgatt 74  Q
    ||||||||||| ||||||| || |||||||||||||| ||||||||    
T  37866975 taaattaaaaacattaattcatgtgacaattctaaatattttgatt 37866930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 20906343 - 20906283
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||| ||| |||||||||||||||| ||||  |||| ||||||||| ||||||| |||||    
T  20906343 aattgccacgtaaattaaaaatattatttgaagtgacgattctaaatgttttgatcggttg 20906283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 36880069 - 36880009
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||| |||||| |||||| | ||||||||||||||  ||||||||| |||||||| ||||    
T  36880069 aattgtcacatacattaaatacattaattgatatgaagattctaaatgttttgattagttg 36880009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 18688966 - 18689016
Alignment:
Q  29 taaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    ||||||||||| |||||||||| |||||||| ||||| |||||||||||||    
T  18688966 taaattaaaaacattaattgatgtgacaattttaaatgttttgattggttg 18689016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 10663965 - 10663903
Alignment:
Q  16 cagaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    |||||||| ||||||||| ||||| ||||| |||| || ||||||||||| |||||||||||||    
T  10663965 cagaattgtcacataaat-aaaaacattaaatgatgtggcaattctaaatgttttgattggttg 10663903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 19636503 - 19636450
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggtt 78  Q
    ||||||||||||||  |||||||||| || | ||||||||| ||||||||||||    
T  19636503 cacataaattaaaatcattaattgatgtggcgattctaaatgttttgattggtt 19636450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 63671 - 63620
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaatttttt 70  Q
    ||||| ||||||||||||||| |||| ||||| |||||||||||||| ||||    
T  63671 aattgccacataaattaaaaacattatttgatgtgacaattctaaatgtttt 63620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 134961 - 135012
Alignment:
Q  19 aattgacacataaattaaaaatattaattgatatgacaattctaaatttttt 70  Q
    ||||| ||||||||||||||| |||| ||||| |||||||||||||| ||||    
T  134961 aattgccacataaattaaaaacattatttgatgtgacaattctaaatgtttt 135012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 19064298 - 19064352
Alignment:
Q  25 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 79  Q
    |||||||||||||| ||||||||||| || ||||||  ||| |||||||||||||    
T  19064298 cacataaattaaaattattaattgatgtggcaattcagaatgttttgattggttg 19064352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 37141277 - 37141197
Alignment:
Q  18 gaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgt--gcaaaattatttta 96  Q
    |||||| ||||||||||||||| |||||||||| ||  |||||||||| ||| || || ||| ||  ||||||||||||||    
T  37141277 gaattgccacataaattaaaaacattaattgatgtggaaattctaaatgtttagagtgattgtgtgcgcaaaattatttta 37141197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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