View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11919_low_1 (Length: 590)
Name: NF11919_low_1
Description: NF11919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11919_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 33631204 - 33631680
Alignment:
| Q |
18 |
ggaggaagagaaataagtgtggatttgagctttgtagattttgacagattattgtacagaaaaataaaatctgacagattctagtacacttagaagtgat |
117 |
Q |
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| T |
33631204 |
ggaggaagagaaataagtgtggatttgagctttgtagattttgacagattattgtacagaaaaataaaatctgacagattctagtacacttagaagtgat |
33631303 |
T |
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| Q |
118 |
tgaaatggaaaagaagggtgggaacataaatgatggaaggcaaggtgggttgggggcatttaactggacaaacctgtcgatgagaatgaagaaaaaagga |
217 |
Q |
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| T |
33631304 |
tgaaatggaaaagaagggtgggaacataaatgatggaaggcaaggtgggttgggggcatttaactggacaaacctgtcgatgagaatgaagaaaaaagga |
33631403 |
T |
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| Q |
218 |
tgatcaagaaatcaattttgttttaatttggtatatattcaagtttgcatttaagtgaatttaaggtggtttaatgaagataggtagccttacctgaaac |
317 |
Q |
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| T |
33631404 |
tgatcaagaaatcaattttgttttaatttggtatatattcaagtttgcatttaagtgaatttaaggtggtttaatgaagataggtagccttacctgaaac |
33631503 |
T |
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| Q |
318 |
tgaagccccatctctctcttaatgcctttaatggcatggtggttggatccatcaannnnnnncctactactgctatttctattaggaaaataactggtgt |
417 |
Q |
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| T |
33631504 |
tgaagccccatctctctcttaatgcctttaatggcatggtagttggatccatcaatttttttcctactactgctatttctattaggaaaataaccggtgt |
33631603 |
T |
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| Q |
418 |
tcttgatgcattagtttaagaaacaaatataataagaatattttgaaacttacgtaatcaaatgcttaaaagtgtag |
494 |
Q |
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| T |
33631604 |
tcttgatgcattagtttaagaaacaaatataataagaattttttgaaacttacgtaatcaaatgcttaaaagtgtag |
33631680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 584
Target Start/End: Original strand, 33631735 - 33631768
Alignment:
| Q |
551 |
cggaagtatcggttaacatgactctttctattga |
584 |
Q |
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| T |
33631735 |
cggaggtatcggttaacatgactctttctattga |
33631768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 429 - 493
Target Start/End: Complemental strand, 15873904 - 15873839
Alignment:
| Q |
429 |
tagtttaagaaacaaatataataagaatattttgaaacttacgtaatc-aaatgcttaaaagtgta |
493 |
Q |
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| T |
15873904 |
tagttaaagaaacaaatataataagaatttcttgaaacttgtgtaatcaaaatacttaaaagtgta |
15873839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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