View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11919_low_5 (Length: 310)

Name: NF11919_low_5
Description: NF11919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11919_low_5
NF11919_low_5
[»] chr3 (13 HSPs)
chr3 (8-163)||(33794436-33794589)
chr3 (8-163)||(40560678-40560832)
chr3 (8-163)||(14783737-14783891)
chr3 (8-163)||(5048006-5048160)
chr3 (8-168)||(31724350-31724509)
chr3 (9-163)||(20124657-20124811)
chr3 (11-157)||(2439992-2440137)
chr3 (80-169)||(5048294-5048383)
chr3 (88-163)||(2439772-2439847)
chr3 (97-163)||(14784027-14784094)
chr3 (99-163)||(31724657-31724721)
chr3 (86-163)||(40560476-40560552)
chr3 (86-163)||(33794729-33794804)
[»] chr1 (11 HSPs)
chr1 (8-163)||(7709921-7710075)
chr1 (8-163)||(34492448-34492602)
chr1 (8-163)||(52331626-52331780)
chr1 (8-163)||(37646876-37647030)
chr1 (80-163)||(52331409-52331492)
chr1 (80-163)||(7709702-7709785)
chr1 (31-163)||(13618343-13618474)
chr1 (88-163)||(13618582-13618657)
chr1 (100-163)||(34492239-34492302)
chr1 (99-163)||(13618258-13618322)
chr1 (98-163)||(37646744-37646809)
[»] chr8 (4 HSPs)
chr8 (8-178)||(3068761-3068930)
chr8 (8-163)||(3305838-3305992)
chr8 (80-163)||(3069064-3069147)
chr8 (80-163)||(3305621-3305704)
[»] chr4 (14 HSPs)
chr4 (8-169)||(41315895-41316055)
chr4 (8-163)||(42305907-42306060)
chr4 (8-163)||(23254596-23254750)
chr4 (8-163)||(15874230-15874384)
chr4 (8-163)||(20878695-20878849)
chr4 (8-163)||(38484463-38484618)
chr4 (80-163)||(23254379-23254462)
chr4 (8-163)||(55893216-55893367)
chr4 (81-163)||(42306195-42306277)
chr4 (86-168)||(15874524-15874606)
chr4 (89-163)||(41316198-41316271)
chr4 (86-163)||(55893467-55893544)
chr4 (97-163)||(38485175-38485241)
chr4 (113-163)||(20878980-20879030)
[»] chr2 (6 HSPs)
chr2 (8-163)||(12414056-12414210)
chr2 (8-163)||(12426116-12426270)
chr2 (8-163)||(4731902-4732056)
chr2 (80-163)||(4731717-4731800)
chr2 (99-163)||(12413840-12413904)
chr2 (99-163)||(12425900-12425964)
[»] scaffold0428 (2 HSPs)
scaffold0428 (8-163)||(7492-7646)
scaffold0428 (80-163)||(7765-7848)
[»] chr7 (9 HSPs)
chr7 (8-163)||(24825779-24825933)
chr7 (8-163)||(32793002-32793156)
chr7 (11-163)||(11324270-11324421)
chr7 (16-163)||(37873419-37873565)
chr7 (16-163)||(37879077-37879223)
chr7 (86-163)||(24825561-24825638)
chr7 (88-163)||(32792785-32792860)
chr7 (98-162)||(9402563-9402627)
chr7 (99-162)||(11324056-11324119)
[»] chr6 (16 HSPs)
chr6 (8-163)||(33746714-33746868)
chr6 (8-163)||(16766291-16766445)
chr6 (8-163)||(6851251-6851405)
chr6 (8-163)||(16368819-16368973)
chr6 (86-163)||(20582638-20582715)
chr6 (8-139)||(20582827-20582957)
chr6 (86-163)||(16766556-16766633)
chr6 (8-163)||(11242294-11242448)
chr6 (89-163)||(29846978-29847052)
chr6 (86-163)||(11246347-11246424)
chr6 (100-163)||(33746961-33747024)
chr6 (185-280)||(14040994-14041088)
chr6 (99-168)||(16368638-16368707)
chr6 (99-163)||(29846791-29846855)
chr6 (99-163)||(6851549-6851612)
chr6 (8-47)||(29846935-29846974)
[»] chr5 (6 HSPs)
chr5 (8-163)||(31155561-31155715)
chr5 (8-163)||(39761533-39761687)
chr5 (8-177)||(31155881-31156049)
chr5 (80-163)||(39760426-39760509)
chr5 (80-163)||(31156183-31156266)
chr5 (105-163)||(31155372-31155430)
[»] scaffold0291 (2 HSPs)
scaffold0291 (8-163)||(10956-11110)
scaffold0291 (8-163)||(11274-11428)
[»] scaffold0184 (2 HSPs)
scaffold0184 (20-163)||(7183-7326)
scaffold0184 (88-168)||(7015-7095)
[»] scaffold0032 (2 HSPs)
scaffold0032 (80-162)||(33206-33288)
scaffold0032 (12-126)||(32959-33074)
[»] scaffold1408 (1 HSPs)
scaffold1408 (88-163)||(1746-1821)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 33794589 - 33794436
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  33794589 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttt--gcggggactgatttctgaatttttattt 33794492  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33794491 tacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 33794436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 40560678 - 40560832
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||| ||||| |||| || ||||||||||||||||| ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  40560678 cacgtaggtattttagtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 40560776  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40560777 tacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 40560832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 14783891 - 14783737
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| || | |        ||||| ||||||||||||||||||||||    
T  14783891 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggcatttttaaacgaca-aatttttttgcggggactgatttctgaatttttattt 14783793  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||    
T  14783792 tacaaggaccaaaacttaaacgggccatatttgcagggacaagtgcaatatttaag 14783737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 5048160 - 5048006
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  5048160 cacgtaggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagatagattttttc-gcggggactgatttctgaatttttattt 5048062  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||| || |||||||||||||||||||||| || ||||||||||||||||||||    
T  5048061 tacaagaaccaaaacttaaacggaccatatttacaaggacgagtgcaatatttaag 5048006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 31724509 - 31724350
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||  || |||||||||||||||| | |        ||||| ||||||||||||||||||||||    
T  31724509 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaagggtatttttaaaagaca-aatttttttgcggggactgatttctgaatttttattt 31724411  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggctta 168  Q
    ||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||| ||||    
T  31724410 tacaaggaccaaaatttaaacgggccatatttgcatggacgagtgcaatatttaagcctta 31724350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 20124811 - 20124657
Alignment:
Q  9 acgtaggcattttggtgacttatcatgacttaaatgggcac-aggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||||||||| |||| |||||||||||| | |||||||||||||||||| | |        ||||| ||||||||||||||||||||||    
T  20124811 acgtaggcattttggtgacttgtcattacttaaatgggccccaggggtatttttaaaagacatattttttt-gcggggactgatttctgaatttttattt 20124713  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  20124712 tacaaagaccaaaacttaaacggaccatatttacagggacgagtgcaatatttaag 20124657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 2439992 - 2440137
Alignment:
Q  11 gtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttac 110  Q
    ||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||| |||        ||||| |||||||||||||||||||||||||    
T  2439992 gtaggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattttac 2440090  T
Q  111 aaggacgaaaacttaaacggaccatatttgcagggacgagtgcaata 157  Q
    ||| || |||||||||||||||||||||| || ||||||||||||||    
T  2440091 aagaaccaaaacttaaacggaccatatttacaaggacgagtgcaata 2440137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 5048294 - 5048383
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggcttat 169  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  5048294 gcggggactgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccttat 5048383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 2439847 - 2439772
Alignment:
Q  88 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  2439847 tgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 2439772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 14784027 - 14784094
Alignment:
Q  97 aatttttatttt-acaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  14784027 aatttttatttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaag 14784094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 31724657 - 31724721
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||| |||||  |||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  31724657 tttttaatttaccgggacaaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaag 31724721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 40560552 - 40560476
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||||||||||||| ||||||| |||| |||| | |||||   |||||||||||||||| ||||||||||||||    
T  40560552 actgatttctgaattttt-ttttacagggactaaaattaaaacgaggcatatttgcagggacgggtgcaatatttaag 40560476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 33794729 - 33794804
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||||||| |||||  |||||| |||| |||| | |||||   |||||||||||||||||||||||||||||||    
T  33794729 actgatttctgatttttt--tttacagggactaaaattaaaacgaggcatatttgcagggacgagtgcaatatttaag 33794804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 7709921 - 7710075
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||        ||  | ||||||||||||||||||||||    
T  7709921 cacgtaggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagattttttt-gcaaggactgatttctgaatttttattt 7710019  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7710020 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 7710075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 34492448 - 34492602
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        |||||||||||| |||||||||||||||    
T  34492448 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagattttttt-gcgggaactgatgtctgaatttttattt 34492546  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  34492547 tacaaggaccaaaacttaaacagaccatatttgcaggaacgagtgcaatatttaag 34492602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 52331626 - 52331780
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| | |        ||||| |||||||||| |||||||||||    
T  52331626 cacgtaggcattttgatgacttgtcatgacttaaatgggcccaggggtatttttaaaagata-aatttttttgcggggactgatttctaaatttttattt 52331724  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  52331725 tacaaggatcaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 52331780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 37646876 - 37647030
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        ||  | |||||||| |||||||||||||    
T  37646876 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacaga-tttttttgcacggactgatttttgaatttttattt 37646974  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||  ||||||||||||  |||| |||||||||||||    
T  37646975 tacaaggaccaaaacttaaacgagccatatttgcagaaacgaatgcaatatttaag 37647030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 52331492 - 52331409
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  52331492 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 52331409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 7709785 - 7709702
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||    
T  7709785 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagttcaatatttaag 7709702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 13618343 - 13618474
Alignment:
Q  31 tcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacgg 130  Q
    ||||||||||||||||| ||||||||||||||||||| |||        || || | |||||||||| |||||||||||||||||| |||||||||||||    
T  13618343 tcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gctgggattgatttctgattttttattttacaaggaccaaaacttaaacgg 13618441  T
Q  131 accatatttgcagggacgagtgcaatatttaag 163  Q
     |||||||||||||||||| |||||||||||||    
T  13618442 gccatatttgcagggacgaatgcaatatttaag 13618474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 13618582 - 13618657
Alignment:
Q  88 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  13618582 tgatttctgattttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaag 13618657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 34492302 - 34492239
Alignment:
Q  100 ttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34492302 tttttttttacacggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 34492239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 13618322 - 13618258
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||||||| |||| |||||||||||||  |||||||||||||| ||||||||||||||||    
T  13618322 ttttttttttacagggactaaaacttaaacgggtcatatttgcagggaagagtgcaatatttaag 13618258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 37646809 - 37646744
Alignment:
Q  98 atttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||| ||||||| |||| ||||   ||||| | ||||||||||||||||| |||||||||||||    
T  37646809 attttttttttacagggactaaaatcaaaacgaagcatatttgcagggacgaatgcaatatttaag 37646744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 3068930 - 3068761
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  3068930 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 3068832  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggcttataactataat 178  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  3068831 tacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccttttaacaataat 3068761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 3305838 - 3305992
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||        ||||| |||||||||| |||||||||||    
T  3305838 cacgtaggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagattttttt-gcggggactgatttctaaatttttattt 3305936  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  3305937 tacaaggaagaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 3305992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 3069064 - 3069147
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3069064 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 3069147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 3305704 - 3305621
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  3305704 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagttcaatatttaag 3305621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 41316055 - 41315895
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  41316055 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 41315957  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggcttat 169  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  41315956 tacaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagccttat 41315895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 42306060 - 42305907
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  42306060 cacgtaggcattttggtgacttgtcatgacttaaatggg-acaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 42305963  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42305962 tacgaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 42305907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 23254596 - 23254750
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||| ||||||||||||| |||||||||||||| || |||| |||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  23254596 cacgtaggtattttggtgacttgtcatgacttaaatgagcccaggagtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 23254694  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23254695 tacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 23254750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 15874384 - 15874230
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||| | |        ||||| ||||||||||||||||||||||    
T  15874384 cacgtaggcattttggtgacttgtcatgccttaaatgcgcccaggggtatttttaaaagaca-aatttttttgcggggactgatttctgaatttttattt 15874286  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  15874285 tacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 15874230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 20878849 - 20878695
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  20878849 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagattttttt-gcggggactgatttctgaatttttattt 20878751  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||| ||||||||||||||| ||||| ||| ||||||    
T  20878750 tacaaggaccaaaacttaaacgggccatatttgcagggatgagtggaatgtttaag 20878695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 38484618 - 38484463
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||| |||        ||    ||||||||||||||||||||||    
T  38484618 cacgtaggcattttggtgacttgtcatgacttaaatggacccagggatatttttaaaagacagattttttttgcaaagactgatttctgaatttttattt 38484519  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||||    
T  38484518 tacaaggaccaaaacttaaacgggccatatttacagagacgagtgcaatatttaag 38484463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 23254462 - 23254379
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  23254462 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaag 23254379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 55893367 - 55893216
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||| |||        ||||| |   ||||||||||||||||||    
T  55893367 cacgtaggcattttggtgacttgtcatgacttaaatgagcccagggctatttttaaaagacagattttttt-gcgggga---atttctgaatttttattt 55893272  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||  || ||||||||||||| |||||||||||| |||| ||||||||||||||    
T  55893271 tacaataaccaaaacttaaacgggccatatttgcagagacgggtgcaatatttaag 55893216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 42306195 - 42306277
Alignment:
Q  81 cgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||    
T  42306195 cggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttggagggacgagttcaatatttaag 42306277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 15874524 - 15874606
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggctta 168  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||||||||||||||| ||||| ||||    
T  15874524 actgatttctgaatttttattttacaaagaccaaaacttaaacggggcatatttgcagggacgagtgcaatacttaagcctta 15874606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 41316198 - 41316271
Alignment:
Q  89 gatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  41316198 gatttctgaatttt-attttacaaggaccaaaacttaaacgaaccatatttgcagggacgagtgcaatatttaag 41316271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 55893467 - 55893544
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||  |||||||| |||||||||||||||||||||||    
T  55893467 actgatttctgaatttttatttttcaaggaccaaaacttaaacgagccatatttacagggacgagtgcaatatttaag 55893544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 38485175 - 38485241
Alignment:
Q  97 aatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||| ||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  38485175 aattttttttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaag 38485241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 20878980 - 20879030
Alignment:
Q  113 ggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||||||||    
T  20878980 ggacgaagacttaaacgggccatatttgcagggacgagtgtaatatttaag 20879030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 12414056 - 12414210
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  12414056 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 12414154  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12414155 tacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 12414210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 12426116 - 12426270
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  12426116 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 12426214  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12426215 tacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 12426270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 4731902 - 4732056
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||| | |        ||||| ||||||||||||||||||||||    
T  4731902 cacgtagacattttggtgacttgtcatgacttaaatgggcccagggatatttttaaaagacatattttttt-gcggggactgatttctgaatttttattt 4732000  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  4732001 tacaaggaccaaaacttaaacggaccatatttgcagggatgagtgcaatatttaag 4732056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 4731800 - 4731717
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  4731800 gcgggaactgatttctgaatttttattttacaaggaccaaatcttaaacgggccatatttgcagggacgagtgcaatatttaag 4731717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 12413904 - 12413840
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  12413904 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaag 12413840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 12425964 - 12425900
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  12425964 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaag 12425900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 7646 - 7492
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        ||||| | ||||||||||||||||||||    
T  7646 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggattgatttctgaatttttattt 7548  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  7547 tagaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 7492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 7765 - 7848
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||    
T  7765 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacgagtgcaatatttaag 7848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 24825779 - 24825933
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  24825779 cacgtaggcattttggtgacttgttatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 24825877  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    | ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  24825878 ttcaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 24825933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 32793002 - 32793156
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||        || || ||||||||||||||||||||||    
T  32793002 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcagggactgatttctgaatttttattt 32793100  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||    
T  32793101 tacaaggaccaaaacttaaacgggctatatttgcagggacgagtgcaatatttaag 32793156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 11324270 - 11324421
Alignment:
Q  11 gtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttac 110  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||        ||||  | |||||||||||||||||||||||    
T  11324270 gtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggagattgatttctgaatttttattttac 11324368  T
Q  111 aaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||| ||||||||||||  |||||||||||||||||| |||||||||||||    
T  11324369 aaggaccaaaacttaaacgagccatatttgcagggacgaatgcaatatttaag 11324421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 37873565 - 37873419
Alignment:
Q  16 cattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 115  Q
    |||||||||||| | |||| | |||||||||| ||||||||||||||||||| |||        || || ||||||||||||||||||||||||||||||    
T  37873565 cattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaatttttt-gcagggactgatttctgaatttttattttacaagga 37873467  T
Q  116 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  37873466 ccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 37873419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 37879077 - 37879223
Alignment:
Q  16 cattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 115  Q
    |||||||||||| | |||| | |||||||||| ||||||||||||||||||| |||        || || | ||||||||||||||||||||||||||||    
T  37879077 cattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaatttttt-gcagggattgatttctgaatttttattttacaagga 37879175  T
Q  116 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    | |||||||||||||  ||||||||||||||||||| |||||||||||    
T  37879176 ccaaaacttaaacgggtcatatttgcagggacgagtacaatatttaag 37879223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 24825638 - 24825561
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||    
T  24825638 actgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgagtgcaatatttaag 24825561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 32792860 - 32792785
Alignment:
Q  88 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  32792860 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaag 32792785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 9402627 - 9402563
Alignment:
Q  98 atttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 162  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||    
T  9402627 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaa 9402563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 11324119 - 11324056
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 162  Q
    ||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  11324119 ttttttttttacagggacgaaaacttaatcgggccatatttgcagggacgagtgcaatatttaa 11324056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 33746868 - 33746714
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        || || | ||||||||||||||||||||    
T  33746868 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcagggattgatttctgaatttttattt 33746770  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33746769 tacatggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 33746714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 16766445 - 16766291
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||||||||||  |||||||||||||||| || |||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  16766445 cacgtaggcattttggtgacttgccatgacttaaatgggcccaagggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 16766347  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||| |||||||||| ||  |||||||||||||||||||||||||||||||    
T  16766346 tacaaagaccaaaacttaaatgggtcatatttgcagggacgagtgcaatatttaag 16766291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 6851405 - 6851251
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||| ||||||||||||||| |||||||||||||||   ||||||||||||||||||| ||         | ||||||||||||||||||||||||||    
T  6851405 cacgtaagcattttggtgacttgtcatgacttaaatggatccaggggtatttttaaaagacag-ttttttttgtgggaactgatttctgaatttttattt 6851307  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||| |||||||||||||| |||||||||| ||||||||||||||||||||    
T  6851306 tacaaagaccaaaacttaaacggatcatatttgcatggacgagtgcaatatttaag 6851251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 16368819 - 16368973
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| | |          |||| |||||||||||||||| ||||    
T  16368819 cacgtaggcattttggtgacttgtcatgatttaaatgggcccaggggtatttttaaaagacaaatttttttgtaggga-ctgatttctgaattttcattt 16368917  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  16368918 tacacggaccaaaacttaaacggatcatatttgcagggacgagtgcaatatttaag 16368973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 20582715 - 20582638
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  20582715 actgatttctgaatttttattttacaaggaccaaaacttaaacggactatatttgtagggacgagtgcaatatttaag 20582638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 20582827 - 20582957
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||| |||        |||||  ||||||||| |||||||||||    
T  20582827 cacgtaggcattttgatgacttgtcatgacttaaatgggcccagggatatttttaaaagacaga-tttttttgcggggtctgatttctaaatttttattt 20582925  T
Q  108 tacaaggacgaaaacttaaacggaccatattt 139  Q
    ||||||||| ||||||||||||| ||||||||    
T  20582926 tacaaggaccaaaacttaaacgggccatattt 20582957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 16766556 - 16766633
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||    
T  16766556 actgatttctgaatttttattttacaaggaccaaaacataaacgggccatatttgcagggacgattgcaatatttaag 16766633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 11242448 - 11242294
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||||| || | ||||||||||||||||  || | |||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  11242448 cacgtaggcattttggtcacctgtcatgacttaaatgggtccatgagtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 11242350  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||  |||||||||| |  ||||||||   |||||||||||||||||||||    
T  11242349 tacaaggatcaaaacttaaatgagccatatttatggggacgagtgcaatatttaag 11242294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 29846978 - 29847052
Alignment:
Q  89 gatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||||||||||||||||||  ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  29846978 gatttctgaatttttattttacagagaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 29847052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 11246347 - 11246424
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||| ||||||||||||||||||||||  |||||||||| || |||||||||||||| ||||||||||||||||    
T  11246347 actgatttgtgaatttttattttacaaggactcaaacttaaacagatcatatttgcagggatgagtgcaatatttaag 11246424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 33746961 - 33747024
Alignment:
Q  100 ttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  33746961 tttttttttacaaggacgaaaacttaaacgggccatatttgcagggacgggtgcaatatttaag 33747024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 14040994 - 14041088
Alignment:
Q  185 ttgtagaacacgctgtagatcctaatatacaggcattctcttgagtttatttaatttttcttgcacactaaaagcatgacttagttgtgatcttta 280  Q
    ||||| |||||| ||||||||| |||||||| |||| |||||  |||||| || |||||||| ||||||||||||||||||||||||| |||||||    
T  14040994 ttgtacaacacgttgtagatccaaatatacatgcatgctcttatgtttatata-tttttctttcacactaaaagcatgacttagttgtaatcttta 14041088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 16368707 - 16368638
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggctta 168  Q
    ||||| ||||||| ||||||||||||||||   |||||||||||||||||||||||||||||||| ||||    
T  16368707 ttttttttttacagggacgaaaacttaaacatgccatatttgcagggacgagtgcaatatttaagcctta 16368638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 29846855 - 29846791
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||||||| ||||||||||||||| |  ||||||||||||||||||||||||||||||||    
T  29846855 ttttttttttacagggacgaaaacttaaatgacccatatttgcagggacgagtgcaatatttaag 29846791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 6851549 - 6851612
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||||||| | |||||||||||||||  |||||||||||| |||| ||||||||||||||    
T  6851549 ttttttttttacaggaacgaaaacttaaacgagccatatttgcagagacg-gtgcaatatttaag 6851612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 29846935 - 29846974
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggc 47  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  29846935 cacgtaggcaatttggtgacttgtcatgacttaaatgggc 29846974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 31155561 - 31155715
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| | |        ||||| ||||||||||||||||||||||    
T  31155561 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaagggtatttttaaaagacatattttttt-gcggggactgatttctgaatttttattt 31155659  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  31155660 tacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaag 31155715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 39761533 - 39761687
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        || || ||||||||||||||||||||||    
T  39761533 cacgtaagcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagattttttt-gcagggactgatttctgaatttttattt 39761631  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||  |||||||||||||||| |||||||||||||||    
T  39761632 tacaaggaccaaaacttaaacgtgccatatttgcagggacaagtgcaatatttaag 39761687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 31156049 - 31155881
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||| ||||||||||||||| |||| |||||||||||| ||||||||||||||||||| | |        ||| | ||||||||||||||||||||||    
T  31156049 cacgtaagcattttggtgacttgtcataacttaaatgggcccaggggtatttttaaaagacatattttttt-gcgaggactgatttctgaatttttattt 31155951  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggcttataactataa 177  Q
    ||||||||| ||||||||||||   ||||||||||||||||||  ||||||||||| | ||||| |||||    
T  31155950 tacaaggaccaaaacttaaacgtgtcatatttgcagggacgagatcaatatttaagccatataaatataa 31155881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 39760509 - 39760426
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39760509 gcggggactaatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 39760426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 31156183 - 31156266
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||    
T  31156183 gcggggactgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttgtagggacgaatgcaatatttaag 31156266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 31155430 - 31155372
Alignment:
Q  105 ttttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||||||| |||| |||||||| ||||||||||| |||||||| |||||||||||    
T  31155430 ttttacaaggacaaaaaattaaacgggccatatttgcatggacgagtacaatatttaag 31155372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 11110 - 10956
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||| |||||| |||| || ||||||||| ||||||||||||||||||| |||        ||| | ||||||||||||||||||||||    
T  11110 cacgtaggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagattttttt-gcgaggactgatttctgaatttttattt 11012  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  11011 tacaaggaccaaaatttaaacgggccatatttgcagggacgagtgcaatatttaag 10956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 11274 - 11428
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||| |||||| |||| || ||||||||| ||||||||||||||||||| |||        ||| | ||||||||||||||||||||||    
T  11274 cacgtaggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagattttttt-gcgaggactgatttctgaatttttattt 11372  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||    
T  11373 tacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaag 11428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 7183 - 7326
Alignment:
Q  20 ttggtgacttatcatgacttaaatgggcacaggggtatttttaaaa-gagagannnnnnnngcgggaactgatttctgaatttttattttacaaggacga 118  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| || |||        ||||| ||||||||||||||||||||||||||||||| |    
T  7183 ttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaaagacagattttttt-gcggggactgatttctgaatttttattttacaaggacca 7281  T
Q  119 aaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||||||| |||||||||||||||||| | |||||||||||    
T  7282 aaacttaaacgggccatatttgcagggacgaatccaatatttaag 7326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 7095 - 7015
Alignment:
Q  88 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggctta 168  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  7095 tgatttctgaatttttattttataaggaccaaaacttaaacggaccatatttgcaggaacgagtgcaatatttaagcctta 7015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 33206 - 33288
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 162  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  33206 gcggggactgatttctgaatttttattttacaaggaccaaaacataaacggaccatatttgcagggacgagtgcaatatttaa 33288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 33074 - 32959
Alignment:
Q  12 taggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagaga-nnnnnnnngcgggaactgatttctgaatttttattttac 110  Q
    |||||||||||||||||| |||||||||| |||||  ||||||||||||||||||| |||         ||||| |||||||||||||||||||||||||    
T  33074 taggcattttggtgacttgtcatgacttatatgggtccaggggtatttttaaaagacagatttttttttgcggggactgatttctgaatttttattttac 32975  T
Q  111 aaggacgaaaacttaa 126  Q
    |||||| |||||||||    
T  32974 aaggaccaaaacttaa 32959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 1821 - 1746
Alignment:
Q  88 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    |||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  1821 tgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 1746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University