View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11919_low_7 (Length: 275)

Name: NF11919_low_7
Description: NF11919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11919_low_7
NF11919_low_7
[»] chr3 (6 HSPs)
chr3 (1-200)||(33631770-33631947)
chr3 (93-200)||(17057142-17057250)
chr3 (199-263)||(33632162-33632226)
chr3 (199-263)||(17057468-17057532)
chr3 (53-90)||(33632536-33632573)
chr3 (54-138)||(34936715-34936799)
[»] chr7 (1 HSPs)
chr7 (79-195)||(43492947-43493063)
[»] chr5 (2 HSPs)
chr5 (103-159)||(43378621-43378677)
chr5 (103-159)||(43379448-43379504)
[»] chr6 (1 HSPs)
chr6 (103-153)||(13207395-13207445)
[»] chr1 (2 HSPs)
chr1 (51-134)||(15668268-15668351)
chr1 (46-75)||(7338846-7338875)
[»] chr8 (2 HSPs)
chr8 (103-153)||(28584354-28584404)
chr8 (54-134)||(41889323-41889403)
[»] scaffold0151 (1 HSPs)
scaffold0151 (106-159)||(20792-20845)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 33631770 - 33631947
Alignment:
Q  1 gtgcactaataattttttgttaattagtcttgcatggttcccttaaaaaatatgagtccatctttgctccatttaacaatactctatttagacctgtaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||| ||    
T  33631770 gtgcactaataattttttgttaattagtcttgcatggttcccttaaaaaatatgagtccat----------------------ctatttagacctgttca 33631847  T
Q  101 cttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttgnnnnnnncacttgtttattgaataaaaaatcaacattcgcg 200  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||       |||||||||| |||||||||||||||||||||||    
T  33631848 cttcttagatgtgtgacacatggcaaaaatgaaactaacgattgagataaaaatgtttggaaaaaacacttgtttactgaataaaaaatcaacattcgcg 33631947  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 17057142 - 17057250
Alignment:
Q  93 cctgtacacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttgnnnnnnncacttgtttattgaat-aaaaaatca 191  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       |||||||||| ||||| |||||||||    
T  17057142 cctgttcacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaaggtttggaaaaaacacttgtttactgaataaaaaaatca 17057241  T
Q  192 acattcgcg 200  Q
    |||||||||    
T  17057242 acattcgcg 17057250  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 33632162 - 33632226
Alignment:
Q  199 cgatcttctttctcttgttgttggatatgtgttgttccactcttcaatttcactcttgatctgtg 263  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  33632162 cgatcttctttctcttgttgttggatctgtgttgttgcactcttcaatttcactcttgatctgtg 33632226  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 17057468 - 17057532
Alignment:
Q  199 cgatcttctttctcttgttgttggatatgtgttgttccactcttcaatttcactcttgatctgtg 263  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||    
T  17057468 cgatcttctttctcttgttgttggatctgtgttgttccactcttcaatttcactctcgttctgtg 17057532  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 33632573 - 33632536
Alignment:
Q  53 tgagtccatctttgctccatttaacaatactctattta 90  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  33632573 tgagtccatctttgctccatttaataatactccattta 33632536  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 34936715 - 34936799
Alignment:
Q  54 gagtccatctttgctccatttaacaatactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaaccaa 138  Q
    |||| ||||||||||||||||| ||   ||| |||||  ||| | |||||| ||||| ||||||| ||||||||||| |||||||    
T  34936715 gagtgcatctttgctccatttaccatacctccatttatcccttttcacttcatagatttgtgacatgtggcaaaaataaaaccaa 34936799  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 195
Target Start/End: Complemental strand, 43493063 - 43492947
Alignment:
Q  79 atactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttgnnnnnnncacttgtttatt 178  Q
    |||||| |||||  ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||       |||||||||| |    
T  43493063 atactccatttacccctgttcacttcttagatgtgtgacacatggcaaaaatgaaaccaacggttgagattaaaaggtttggaaaaaacacttgtttact 43492964  T
Q  179 gaataaaaaatcaacat 195  Q
    |||||||||||||||||    
T  43492963 gaataaaaaatcaacat 43492947  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 43378621 - 43378677
Alignment:
Q  103 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttg 159  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||    
T  43378621 tcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaaggtttg 43378677  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 43379504 - 43379448
Alignment:
Q  103 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttg 159  Q
    |||||||||||||||| ||||||||||| ||| ||| ||||| |||||||| |||||    
T  43379504 tcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaaggtttg 43379448  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 13207395 - 13207445
Alignment:
Q  103 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaa 153  Q
    |||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  13207395 tcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 15668351 - 15668268
Alignment:
Q  51 tatgagtccatctttgctccatttaacaatactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaa 134  Q
    |||||||||||||||||||||||||| ||  ||| |||||  ||| | ||||  || ||||||||||| |||||||||||||||    
T  15668351 tatgagtccatctttgctccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaa 15668268  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 7338875 - 7338846
Alignment:
Q  46 aaaaatatgagtccatctttgctccattta 75  Q
    ||||||||||||||||||||||||||||||    
T  7338875 aaaaatatgagtccatctttgctccattta 7338846  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 28584404 - 28584354
Alignment:
Q  103 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaa 153  Q
    |||||||| ||||||||||||||||||| ||||||| ||  ||||||||||    
T  28584404 tcttagatatgtgacacgtggcaaaaataaaaccaagggccgagattaaaa 28584354  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 41889323 - 41889403
Alignment:
Q  54 gagtccatctttgctccatttaacaatactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaa 134  Q
    ||||||||||||| ||||||||| ||  ||| |||||  ||| | ||||  || ||||||||||| |||||||||||||||    
T  41889323 gagtccatctttgttccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaa 41889403  T

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Target: scaffold0151 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 20792 - 20845
Alignment:
Q  106 tagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttg 159  Q
    ||||||||||||| |||| |||||| ||||||| || ||||||||||| |||||    
T  20792 tagatgtgtgacatgtggtaaaaataaaaccaatggctgagattaaaaggtttg 20845  T

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