View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11920_high_2 (Length: 379)
Name: NF11920_high_2
Description: NF11920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11920_high_2 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 13968438 - 13968078
Alignment:
| Q |
19 |
aaaggttgctgtgttgtaaggtaggagaccatcaacataattgaggctaccagtgaatttggtctttgcaggaccatcaaccatgtcaattggattagta |
118 |
Q |
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| T |
13968438 |
aaaggttgctgtgttgtaaggtaggagaccatcagcataatggaggctaccggtgaatttggtctttgcaggaccatcaaccatgtcaattggattacta |
13968339 |
T |
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| Q |
119 |
ttaattgagaaaaatcttatatatacactcatggtgtttttgaacaaagctacatatgagtactaaactttaactttgatccaaatccatgaccgcagnn |
218 |
Q |
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| T |
13968338 |
ttaattgaaaaaaatcttatatatacactcatggtgtttttgaacaaagttacatatgagtactaaactttaactttgatccaaatccatgaccgcagaa |
13968239 |
T |
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| Q |
219 |
nnnnnnctaccggattacataggtccaagtgaataaggaacaccagacttcgcaatccaagtatcacgtgcagttgcattagcaatctcaaagaatttac |
318 |
Q |
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| T |
13968238 |
aaaaaactaccggattacataggtccaagtgaataaggaacaccagacttcacaatccaagtatcacgtgcagttgcattaacaatctcaaagaatttac |
13968139 |
T |
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| Q |
319 |
cagggtaatattcagctgctacatttgaagctaaaaccttaacaccaggccatttaactct |
379 |
Q |
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| T |
13968138 |
cagggtaatattcagctgctacatttgaagttaaaaccttaacaccatgccatttaactct |
13968078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 128 - 379
Target Start/End: Complemental strand, 13978415 - 13978164
Alignment:
| Q |
128 |
aaaaatcttatatatacactcatggtgtttttgaacaaagctacatatgagtactaaactttaactttgatccaaatccatgaccgcagnnnnnnnncta |
227 |
Q |
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| T |
13978415 |
aaaaatctcatgtatacactcatggtgttgttgaacaaagttatatatgagtactaaactttaactttgatctaaatccatgaccacaggaaaaaagctg |
13978316 |
T |
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| Q |
228 |
ccggattacataggtccaagtgaataaggaacaccagacttcgcaatccaagtatcacgtgcagttgcattagcaatctcaaagaatttaccagggtaat |
327 |
Q |
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| T |
13978315 |
ccggattacataggtccaagtgaataaggaacaccagacttcacaatccaagtatcacgtgcagttgcattaacaatctcaaagaatttaccagggtaat |
13978216 |
T |
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| Q |
328 |
attcagctgctacatttgaagctaaaaccttaacaccaggccatttaactct |
379 |
Q |
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| T |
13978215 |
attcagctgctacatttgaagttaaaaccttaacaccatgccatttaactct |
13978164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 244 - 379
Target Start/End: Complemental strand, 13961049 - 13960914
Alignment:
| Q |
244 |
caagtgaataaggaacaccagacttcgcaatccaagtatcacgtgcagttgcattagcaatctcaaagaatttaccagggtaatattcagctgctacatt |
343 |
Q |
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| T |
13961049 |
caagtgaataaggaactccagacttcacaatccaagtatcacgatcggttgcattcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagt |
13960950 |
T |
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| Q |
344 |
tgaagctaaaaccttaacaccaggccatttaactct |
379 |
Q |
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| T |
13960949 |
tgaagatatactcttaacaccaggccatttaactct |
13960914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 13959628 - 13959551
Alignment:
| Q |
20 |
aaggttgctgtgttgtaaggtaggagaccatcaacataattgaggctaccagtgaatttggtctttgcaggaccatca |
97 |
Q |
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| T |
13959628 |
aaggttgcagtgttgtaaggtaggagaccatccgcataattgaggctaccagtgaatttggtctttgcaggaccatca |
13959551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 13967173 - 13967123
Alignment:
| Q |
46 |
accatcaacataattgaggctaccagtgaatttggtctttgcaggaccatc |
96 |
Q |
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| T |
13967173 |
accatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatc |
13967123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 13977341 - 13977291
Alignment:
| Q |
46 |
accatcaacataattgaggctaccagtgaatttggtctttgcaggaccatc |
96 |
Q |
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| T |
13977341 |
accatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatc |
13977291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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