View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11920_high_4 (Length: 349)
Name: NF11920_high_4
Description: NF11920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11920_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 19796420 - 19796746
Alignment:
| Q |
7 |
gagagaagaaacattggtagctagggttttagggtgattttcatgaaaccagagagcggcggcgtagaagccttctttgttggactttccggtaccgcgg |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19796420 |
gagagaaggaacattggtagctagggttttagggtgattttcatgaaaccagagagcggcggcgtagaagccttctttgttggactttccggtaccgcgg |
19796519 |
T |
|
| Q |
107 |
acgccacggaggttacagacgagtttgagggcggtgagagggttttgggaccaagcattttttagtctctcaatgagtgtttcagaaggagtatcaggaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19796520 |
acgccacggaggttacagacgagtttgagggcggtgagagggttttgggaccaagcaagtttgagtctctcaacgagtgtttcagaaggagtatcaggaa |
19796619 |
T |
|
| Q |
207 |
caacatggaagaagaaatcgaggcaagggttaccggtggagagaaacgttggtgacatgttctctgtcaaccccatcggtgggtttcggtttctaccaag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19796620 |
caacatggaagaagaaatcgaggcaagggttaccggtggagagaaacgttggtgacatgttctctgtcaaccccatcggtgggtttcggtttctaccaag |
19796719 |
T |
|
| Q |
307 |
agaattgaagttggcgaccatttgatc |
333 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
19796720 |
agaattgaagttggcgaccatttgatc |
19796746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 15835662 - 15835984
Alignment:
| Q |
11 |
gaagaaacattggtagctagggttttagggtgattttcatgaaaccagagagcggcggcgtagaagccttctttgttggactttccggtaccgcggacgc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||| |||||||| || || | |
|
|
| T |
15835662 |
gaagaaacattggtagctagggttttagggtgattttcatgcaaccagagagcagcagcgtagaagccttctttattggacttgccggtaccacgaacac |
15835761 |
T |
|
| Q |
111 |
cacggaggttacagacgagtttgagggcggtgagagggttttgggaccaagcattttttagtctctcaatgagtgtttcagaaggagtatcaggaacaac |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| |||||||| || ||| |||||||| | ||||||||||| |||||||| || ||||| |
|
|
| T |
15835762 |
cacggaggttacagacgagtttgagggtggtgagtgggttatgggaccatgctagtttgagtctctcgacaagtgtttcagagggagtatcggggacaac |
15835861 |
T |
|
| Q |
211 |
atggaagaagaaatcgaggcaagggttaccggtggagagaaacgttggtgacatgttctctgtcaaccccatcggtgggtttcggtttctaccaagagaa |
310 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||| || ||||||||| ||||||||||||| || | |||||| |
|
|
| T |
15835862 |
atggaagaagaaatcaaggcatgggttaccggtggagagaaatgtcggtgacatgttctcggtgaaccccatcagtgggtttcggttacttgccagagaa |
15835961 |
T |
|
| Q |
311 |
ttgaagttggcgaccatttgatc |
333 |
Q |
| |
|
||||||||| | ||||||||||| |
|
|
| T |
15835962 |
ttgaagttgtccaccatttgatc |
15835984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 47713490 - 47713624
Alignment:
| Q |
25 |
agctagggttttagggtgattttcatgaaaccagagagcggcggcgtagaagccttctttgttggactttccggtaccgcggacgccacggaggttacag |
124 |
Q |
| |
|
|||||||||||||||||| | | |||||||| ||||| ||||||||||| ||||| | |||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
47713490 |
agctagggttttagggtggtagtggtgaaaccaaagagcagcggcgtagaaaccttcacgatcggacttgccggtaccgcgaacgccgcggaggttacag |
47713589 |
T |
|
| Q |
125 |
acgagtttgagggcggtgagagggttttgggacca |
159 |
Q |
| |
|
|||||||| |||| |||||| ||||| | |||||| |
|
|
| T |
47713590 |
acgagtttaagggtggtgagtgggttataggacca |
47713624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University