View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11920_low_3 (Length: 369)
Name: NF11920_low_3
Description: NF11920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11920_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 123 - 345
Target Start/End: Complemental strand, 29006103 - 29005880
Alignment:
| Q |
123 |
tattatataatgtttctatcatctaagtcaagcccaaaacgatgatccctcgttttaaaggaatatagagagagacttttggcataaattatgttgatat |
222 |
Q |
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| T |
29006103 |
tattatataatgtttctatcaactgagtcaagcccaaaacaatgatccctcgttttaaaggaatatagagagagacttttggcataaattatgttgatat |
29006004 |
T |
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| Q |
223 |
caaatcaaaaatattattgcttgcatatatattattattgttatttc-tttnnnnnnnntagtattactattgttattattttgcgaatttatgtttgca |
321 |
Q |
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| T |
29006003 |
caaatcaaaaatattattgcttgcatatatattattattgttatttcttttaaaaaaaatagtattactattgttattattttgcgaatttatgtttaaa |
29005904 |
T |
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| Q |
322 |
tcaaatcgaaaatatcatagttgt |
345 |
Q |
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| T |
29005903 |
tcaaatcgaaaatatcatagttgt |
29005880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 29006200 - 29006103
Alignment:
| Q |
1 |
gtaggggccatcatgtgtcgtgtgtagtgatctctcggtttttt---aagtaatttagttgttagaaatttatcttttataagtgaataagtggatgt |
95 |
Q |
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|||||| ||||| | |||||||||||||||||||||| |||||| || || ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29006200 |
gtagggcccatcttatgtcgtgtgtagtgatctctcgtttttttttcaaatagtttagttgttagaaatttatcttttataagtgattaagtggatgt |
29006103 |
T |
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