View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11920_low_6 (Length: 279)
Name: NF11920_low_6
Description: NF11920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11920_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 31083231 - 31082977
Alignment:
| Q |
11 |
cataggcagccgaatgtcttcagattaattagctttggtttgctgctatgccaagcttcaaatggagtctttttctgcacaacttttgttggcaatctgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31083231 |
cataggcagccgaatgtcttcagattaattagctttggtttgctgctatgccaagcttcaaatggagtctttttctgcacagcttttgttggcaatctgt |
31083132 |
T |
|
| Q |
111 |
tcagcagaaaaactgcagtatttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcaccttgccatctccataattgttcggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31083131 |
tcagcagaaaaactgcagtatttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcaccttgccatctccataattgttcggtt |
31083032 |
T |
|
| Q |
211 |
tttcctctctacaacaccattctgttgtggagtgtatggtgctgttagttgatgt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31083031 |
tttcctctctacaacaccattctgttgtggagtgtatggtgctgttagttgatgt |
31082977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 9308454 - 9308200
Alignment:
| Q |
11 |
cataggcagccgaatgtcttcagattaattagctttggtttgctgctatgccaagcttcaaatggagtctttttctgcacaacttttgttggcaatctgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
9308454 |
cataggcagccgaatgtcttcagattaattagctttggtttgctgctatgccaagcttcaaatggagtctttttctgcacagcttttgttgacaatctgt |
9308355 |
T |
|
| Q |
111 |
tcagcagaaaaactgcagtatttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcaccttgccatctccataattgttcggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9308354 |
tcagcagaaaaactgcagtatttgtagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcaccttgccatctccataattgttcggtt |
9308255 |
T |
|
| Q |
211 |
tttcctctctacaacaccattctgttgtggagtgtatggtgctgttagttgatgt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9308254 |
tttcctctctacaacaccattctgttgtggagtgtatggtgctgttagttgatgt |
9308200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 32147827 - 32147757
Alignment:
| Q |
131 |
tttgcagcctctgcccaaaatttctttggcaaacctttatcatgaagtaagcaccttgccatctccataat |
201 |
Q |
| |
|
||||||||||||||||| || || ||||| ||| |||| ||||| || ||||| ||| ||||||||||||| |
|
|
| T |
32147827 |
tttgcagcctctgcccacaacttttttggaaaatctttttcatgtagcaagcatctttccatctccataat |
32147757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University