View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11921_high_12 (Length: 400)

Name: NF11921_high_12
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11921_high_12
NF11921_high_12
[»] chr7 (3 HSPs)
chr7 (20-349)||(21611729-21612057)
chr7 (302-350)||(21593698-21593746)
chr7 (302-350)||(21586465-21586513)
[»] chr3 (9 HSPs)
chr3 (307-351)||(19610133-19610177)
chr3 (302-340)||(19617903-19617941)
chr3 (301-351)||(32150460-32150509)
chr3 (301-338)||(18478799-18478836)
chr3 (301-338)||(18478872-18478909)
chr3 (301-338)||(19581797-19581834)
chr3 (302-338)||(19549729-19549765)
chr3 (30-94)||(19593819-19593882)
chr3 (302-338)||(19604298-19604334)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 349
Target Start/End: Original strand, 21611729 - 21612057
Alignment:
Q  20 tgttaacattatataaatctatatcttataaatcgagttttaaatttgtgagttttatttttgttgcaggatcaacccaagatgtgaattactgctctaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21611729 tgttaacattatataaatctatatcttataaatcgagttttaaatttgtgagctttatttttgttgcaggatcaacccaagatgtgaattactgctctaa 21611828  T
Q  120 accttgccctaatacttgggaatgcgacgcaaaatgccgtaatcaaggtcagggaggaagctgtatgggaaatttttgttgttgtcagtaataattgaag 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  21611829 accttgccctaatacttgggaatgcgacgcaaaatgccgtagtcagggtcagggaggaagctgtatgggaaacttttgttgctgtcagtaataattgaag 21611928  T
Q  220 taaattacaatattatgaatatttataagtatgttttcctatggagcgaataaataatctcattaaaaaagaagaagaataaactaaataagaaacatat 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| |    
T  21611929 taaattacaatattatgaatatttataagtatgttttcctatggagagaataaataa-ctcattaaaaaagaagaataataaactaaataagaaacatct 21612027  T
Q  320 tcctgcaaagcttttattttcatgtttgaa 349  Q
    |  |||||||||||||||||||||||||||    
T  21612028 ttttgcaaagcttttattttcatgtttgaa 21612057  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 21593746 - 21593698
Alignment:
Q  302 actaaataagaaacatattcctgcaaagcttttattttcatgtttgaag 350  Q
    |||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  21593746 actaaataagaaacatcttccttcaaaggttttaatttcatgtttgaag 21593698  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 21586513 - 21586465
Alignment:
Q  302 actaaataagaaacatattcctgcaaagcttttattttcatgtttgaag 350  Q
    |||||||||||||||| ||||| ||||| || || ||||||||||||||    
T  21586513 actaaataagaaacatcttcctccaaaggttgtaatttcatgtttgaag 21586465  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 19610133 - 19610177
Alignment:
Q  307 ataagaaacatattcctgcaaagcttttattttcatgtttgaagc 351  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||    
T  19610133 ataagaaacatcttcctccaaagcttttattttcacgtttgaagc 19610177  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 19617903 - 19617941
Alignment:
Q  302 actaaataagaaacatattcctgcaaagcttttattttc 340  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  19617903 actaaataagaaacatcttcctccaaagcttttattttc 19617941  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 32150509 - 32150460
Alignment:
Q  301 aactaaataagaaacatattcctgcaaagcttttattttcatgtttgaagc 351  Q
    ||||||||||||||||| ||||| |||||| |||||||||| |||||||||    
T  32150509 aactaaataagaaacatcttcctccaaagc-tttattttcacgtttgaagc 32150460  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 18478836 - 18478799
Alignment:
Q  301 aactaaataagaaacatattcctgcaaagcttttattt 338  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  18478836 aactaaataagaaacattttcctccaaagcttttattt 18478799  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 18478909 - 18478872
Alignment:
Q  301 aactaaataagaaacatattcctgcaaagcttttattt 338  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  18478909 aactaaataagaaacatcttcctccaaagcttttattt 18478872  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 19581797 - 19581834
Alignment:
Q  301 aactaaataagaaacatattcctgcaaagcttttattt 338  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  19581797 aactaaataagaaacattttcctccaaagcttttattt 19581834  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 19549729 - 19549765
Alignment:
Q  302 actaaataagaaacatattcctgcaaagcttttattt 338  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  19549729 actaaataagaaacatcttcctccaaagcttttattt 19549765  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 19593819 - 19593882
Alignment:
Q  30 atataaatctatatcttataaatcgagttttaaatttgtgagttttatttttgttgcaggatcaa 94  Q
    ||||||||||||| |||| | || | ||||||||| ||||| |||||||||||| ||||||||||    
T  19593819 atataaatctatagcttaaatat-gcgttttaaatatgtgaattttatttttgtggcaggatcaa 19593882  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 19604298 - 19604334
Alignment:
Q  302 actaaataagaaacatattcctgcaaagcttttattt 338  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  19604298 actaaataagaaacatcttcctccaaagcttttattt 19604334  T

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