View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11921_high_15 (Length: 366)

Name: NF11921_high_15
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11921_high_15
NF11921_high_15
[»] chr1 (2 HSPs)
chr1 (81-356)||(12246941-12247218)
chr1 (1-55)||(12247243-12247297)
[»] chr8 (7 HSPs)
chr8 (137-352)||(24899145-24899364)
chr8 (82-145)||(24897913-24897976)
chr8 (82-145)||(25401250-25401313)
chr8 (82-145)||(25497430-25497493)
chr8 (1-51)||(24897835-24897885)
chr8 (1-55)||(25401342-25401395)
chr8 (1-55)||(25497522-25497575)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 81 - 356
Target Start/End: Complemental strand, 12247218 - 12246941
Alignment:
Q  81 aacaacaaaagaaacttaagtatgacccaacccaataaaaaagaaacagaaagaaataactgcaacccaattaactcaaaaataatttatcatgatttgt 180  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12247218 aacaacaaaagaaacttaactatgacccaacccaataaaaaagaaacagaaagaaataactgcaacccaattaactcaaaaataatttatcatgatttat 12247119  T
Q  181 accctctactgtgtatttcttccgtttttccacaactgcta-aatggttctcaccctttatctctcaatag-nnnnnnnncctgcatccctccataattt 278  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||         ||||||||||||||||||||    
T  12247118 accctctactgtgtatctcttccgtttttccacaacttctacaatggttcacaccctttatctctcaatagtttctttttcctgcatccctccataattt 12247019  T
Q  279 tcttccattctacaatttcttcatcatttaatacttctgttatggccttcaatttagataagaaaattcggatctgtg 356  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  12247018 tcttccattctacaatttcttcatcatttagtacttctgttatggccttcaatttagataaggaaattcggatctgtg 12246941  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12247297 - 12247243
Alignment:
Q  1 ttaacttttggaacactgataataaaaataagctacgaccaacccaactttcaac 55  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12247297 ttaacttttgaaacactgataataaaaataagctacgaccaacccaactttcaac 12247243  T

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Target: chr8 (Bit Score: 126; Significance: 7e-65; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 137 - 352
Target Start/End: Original strand, 24899145 - 24899364
Alignment:
Q  137 taactgcaacccaattaactcaaaaataatttatcatgatttgtaccctctactgtgtatttcttccgtttttccacaactgcta-aatggttctcaccc 235  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||||    
T  24899145 taactgcaacccaattaactaaaaaataatttatcttgatttgtaccctctactgtgtatctcttccgtttttccacaactggtacaatggttcacaccc 24899244  T
Q  236 tttatctctcaata---gnnnnnnnncctgcatccctccataattttcttccattctacaatttcttcatcatttaatacttctgttatggccttcaatt 332  Q
    ||||||||||||||            |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  24899245 tttatctctcaatattgtttctttttcctgcatccctccataatttccttccattctacaatttcttcatcatttagtacttatgttatggccttcaatt 24899344  T
Q  333 tagataagaaaattcggatc 352  Q
    |||||| | |||||| ||||    
T  24899345 tagatagggaaattcagatc 24899364  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 24897913 - 24897976
Alignment:
Q  82 acaacaaaagaaacttaagtatgacccaacccaataaaaaagaaacagaaagaaataactgcaa 145  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  24897913 acaacaaaagaaacttaattatgacccaacccaataaaaaagaaacggaaagaaataaatgcaa 24897976  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 25401313 - 25401250
Alignment:
Q  82 acaacaaaagaaacttaagtatgacccaacccaataaaaaagaaacagaaagaaataactgcaa 145  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  25401313 acaacaaaagaaacttaactatgacccaacccaataaaaaagaaacggaaagaaataaatgcaa 25401250  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 25497493 - 25497430
Alignment:
Q  82 acaacaaaagaaacttaagtatgacccaacccaataaaaaagaaacagaaagaaataactgcaa 145  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  25497493 acaacaaaagaaacttaactatgacccaacccaataaaaaagaaacggaaagaaataaatgcaa 25497430  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24897835 - 24897885
Alignment:
Q  1 ttaacttttggaacactgataataaaaataagctacgaccaacccaacttt 51  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24897835 ttaacttttggatcactgataataaaaataagctacgaccaacccaacttt 24897885  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25401395 - 25401342
Alignment:
Q  1 ttaacttttggaacactgataataaaaataagctacgaccaacccaactttcaac 55  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  25401395 ttaacttttggaacactgaaaataaaaataagctacgacc-acccaactttcaac 25401342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25497575 - 25497522
Alignment:
Q  1 ttaacttttggaacactgataataaaaataagctacgaccaacccaactttcaac 55  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  25497575 ttaacttttggaacactgaaaataaaaataagctacgacc-acccaactttcaac 25497522  T

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