View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11921_high_17 (Length: 334)
Name: NF11921_high_17
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_high_17 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 146 - 318
Target Start/End: Complemental strand, 18059631 - 18059459
Alignment:
| Q |
146 |
ataacaggttatctgtgaattagacccccttactattgctgaactttttgatgaacttgatgaccaatggacattaattgatggtttagcaaatgttcat |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18059631 |
ataacaggttatctgtgaattagacccccttactattgctgaactttttgatgaacttgatgaccaatggacattaattgatggtttagcaaatgttcat |
18059532 |
T |
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| Q |
246 |
gaagttgaatttaataaatctatgctcatgcaaataattatagggggttgggacaagttcagaaattattata |
318 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18059531 |
gaagttgaatttaacaaatctatgctcatgccaataattatagggggttgggacaagttcagaaattattata |
18059459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 146 - 318
Target Start/End: Complemental strand, 143924 - 143752
Alignment:
| Q |
146 |
ataacaggttatctgtgaattagacccccttactattgctgaactttttgatgaacttgatgaccaatggacattaattgatggtttagcaaatgttcat |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
143924 |
ataacaggttatctgtgaattagacccccttactattgctgaactttttgatgaacttgatgaccaatggacattaattgatggtttagcaaatgttcat |
143825 |
T |
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| Q |
246 |
gaagttgaatttaataaatctatgctcatgcaaataattatagggggttgggacaagttcagaaattattata |
318 |
Q |
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| T |
143824 |
gaagttgaatttaacaaatctatgctcatgccaataattataaggggttgggacaagttcagaaattattata |
143752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 144069 - 143999
Alignment:
| Q |
1 |
taattgcagcatagctccaatgatgacttctgaaagtaatagacctttcttcattgcagtttgcacagagg |
71 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
144069 |
taattgcagcatagctccaatgatgacttctgaaagtaatagacctttcttcattgcagtttgcacagagg |
143999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 18059776 - 18059706
Alignment:
| Q |
1 |
taattgcagcatagctccaatgatgacttctgaaagtaatagacctttcttcattgcagtttgcacagagg |
71 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18059776 |
taattgtagcatagctccaatgatgacttctgaaagtaatagacctttcttcattgcagtttgcacagagg |
18059706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 146 - 306
Target Start/End: Original strand, 17020760 - 17020920
Alignment:
| Q |
146 |
ataacaggttatctgtgaattagacccccttactattgctgaactttttgatgaacttgatgaccaatggacattaattgatggtttagcaaatgttcat |
245 |
Q |
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|||||||||| | || |||||||| || |||||||||||||||||||||||||||||||| | |||||||| || |||||||||| | |||||||||| |
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| T |
17020760 |
ataacaggttttttgcgaattagattccattactattgctgaactttttgatgaacttgatcaacaatggaccttggttgatggtttgggaaatgttcat |
17020859 |
T |
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| Q |
246 |
gaagttgaatttaataaatctatgctcatgcaaataattatagggggttgggacaagttca |
306 |
Q |
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|||||||||||||| |||||||| ||||||| ||| ||| | |||||||||||||||| |
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| T |
17020860 |
gaagttgaatttaacaaatctatactcatgccaatccttacaaccggttgggacaagttca |
17020920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17020583 - 17020653
Alignment:
| Q |
1 |
taattgcagcatagctccaatgatgacttctgaaagtaatagacctttcttcattgcagtttgcacagagg |
71 |
Q |
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||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
17020583 |
taattgcagcatagctccattaatgacttctgaaactaatcgacctttcttcattgcagtttgcacagagg |
17020653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 146 - 306
Target Start/End: Complemental strand, 119274 - 119114
Alignment:
| Q |
146 |
ataacaggttatctgtgaattagacccccttactattgctgaactttttgatgaacttgatgaccaatggacattaattgatggtttagcaaatgttcat |
245 |
Q |
| |
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|||| ||||||| || |||||||| ||| |||| ||||||||||||||||||||||||||| | |||||||| || |||||||||| | |||||||||| |
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| T |
119274 |
ataataggttatttgcgaattagatcccattaccattgctgaactttttgatgaacttgatcaacaatggaccttggttgatggtttgggaaatgttcat |
119175 |
T |
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| Q |
246 |
gaagttgaatttaataaatctatgctcatgcaaataattatagggggttgggacaagttca |
306 |
Q |
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|||||||||||||| |||||||| |||||| ||| ||| | |||||||||||||||| |
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| T |
119174 |
gaagttgaatttaacaaatctatcatcatgccaatccttacaaccggttgggacaagttca |
119114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 119418 - 119348
Alignment:
| Q |
1 |
taattgcagcatagctccaatgatgacttctgaaagtaatagacctttcttcattgcagtttgcacagagg |
71 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||| ||||||||||| |||||||||||||||||| |
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| T |
119418 |
taattgcagcatagctccattaatgacttctgaaactaatcgacctttcttcgttgcagtttgcacagagg |
119348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 19777388 - 19777494
Alignment:
| Q |
162 |
gaattagacccccttactattgctgaactttttgatgaacttgatgaccaatggacattaattgatggtttagcaaatgttcatgaagttgaatttaata |
261 |
Q |
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|||||||| || |||| |||||||||||||| |||||||||| | || || ||||| || || ||||||| | |||| |||||||||||||||||| | |
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| T |
19777388 |
gaattagatccgcttattattgctgaactttatgatgaacttcaagaacattggaccttgatagatggttatggaaataatcatgaagttgaatttaaca |
19777487 |
T |
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| Q |
262 |
aatctat |
268 |
Q |
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||||||| |
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| T |
19777488 |
aatctat |
19777494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 19777231 - 19777300
Alignment:
| Q |
2 |
aattgcagcatagctccaatgatgacttctgaaagtaatagacctttcttcattgcagtttgcacagagg |
71 |
Q |
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|||||||||||||||||| ||||||| ||||| ||||||||| || ||||||||| | |||||||||| |
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| T |
19777231 |
aattgcagcatagctccattgatgacatctgagtctaatagaccatttttcattgcaatctgcacagagg |
19777300 |
T |
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