View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11921_low_10 (Length: 425)

Name: NF11921_low_10
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11921_low_10
NF11921_low_10
[»] chr3 (2 HSPs)
chr3 (12-411)||(51113917-51114317)
chr3 (12-135)||(514864-514988)
[»] chr4 (14 HSPs)
chr4 (12-135)||(12121593-12121717)
chr4 (14-144)||(1508141-1508272)
chr4 (12-128)||(1513540-1513657)
chr4 (12-128)||(1489497-1489614)
chr4 (12-133)||(1534127-1534249)
chr4 (19-128)||(1537910-1538020)
chr4 (49-150)||(1552944-1553045)
chr4 (12-159)||(55505241-55505389)
chr4 (92-133)||(1517716-1517757)
chr4 (20-163)||(553290-553434)
chr4 (113-163)||(640726-640776)
chr4 (113-159)||(6006142-6006188)
chr4 (92-133)||(1496136-1496177)
chr4 (20-71)||(644734-644786)
[»] chr2 (1 HSPs)
chr2 (24-135)||(44575643-44575755)
[»] chr6 (1 HSPs)
chr6 (20-90)||(28934933-28935004)
[»] chr8 (1 HSPs)
chr8 (113-163)||(32151112-32151162)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 51113917 - 51114317
Alignment:
Q  12 cagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcatt 110  Q
    |||||| |||||||||||||||||||||||  |||||| |||||||||||||  |||| ||   |||| || ||||||||  | || || |||||||| |    
T  51113917 cagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctcaat 51114016  T
Q  111 gatattttcaaggccatcattgagagaaataacagctccacctggttttgattcaaccgagaaaatgaaattctacttgagccacaactgctttgtttgg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51114017 gatattttcaaggccatcattgagagaaataacagctccacctggttttgattcaagcgagaaaatgaaattctacttgagccacaactgctttgtttgg 51114116  T
Q  211 tagctgtctgaaacatgaaacaactcttctgaagtataaactctgaaatgcaagttgtttgttgtttacggatttacttatatgagaaattaatttattt 310  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51114117 tagctgtctgaaacatgaaacaactctgctgaagtataaactctgaaatgcaagttgtttgttgattacggatttacttatatgagaaattaatttattt 51114216  T
Q  311 tataaatgtcaacttacatatatgtatttagttacggatataacttatttatcccttttattatattatacgctagactagatgtttttatttgtgtgtg 410  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51114217 tataaatgtcaacttacatatatgtatttagttacggatttaacttatttatcccttttattatattatatgctagactagatgtttttatttgtgtgtg 51114316  T
Q  411 t 411  Q
    |    
T  51114317 t 51114317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 514864 - 514988
Alignment:
Q  12 cagagatgggagtgaagcatgtggt-agaaagtgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcatt 110  Q
    |||||| |||||||||||||||||| | ||| ||||||| ||| ||||||||| |||| | |  ||||  | ||||||||| | ||||| ||||| || |    
T  514864 cagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaatttaagaggttgtaataaagtgcattataatgttgttgccccaat 514963  T
Q  111 gatattttcaaggccatcattgaga 135  Q
    | |||||||||||||||||||||||    
T  514964 ggtattttcaaggccatcattgaga 514988  T

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Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 12121593 - 12121717
Alignment:
Q  12 cagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcatt 110  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12121593 cagagatgggagtgaagcatgtggtagaaaaatgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcatt 12121692  T
Q  111 gatattttcaaggccatcattgaga 135  Q
    |||||||||||||||||||||||||    
T  12121693 gatattttcaaggccatcattgaga 12121717  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 1508141 - 1508272
Alignment:
Q  14 gagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcattga 112  Q
    ||||||||||||||||||| | ||||||  ||||||||||||||||||||| ||||||||||| ||| | | || | | |||||||||||||||||||||    
T  1508141 gagatgggagtgaagcatgcgctagaaaaatgcacacaactaagagagatcaatttgaaatatggtcctaaggtacgtggtgatgttcttgcctcattga 1508240  T
Q  113 tattttcaaggccatcattgagagaaataaca 144  Q
    |||||||||||||||| |||||| ||||||||    
T  1508241 tattttcaaggccatcgttgagaaaaataaca 1508272  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 1513540 - 1513657
Alignment:
Q  12 cagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcatt 110  Q
    |||||||||||||||||| |||| ||||||  ||||||||||| ||||||||| ||||||||||||||  | ||||| || |||||||||||||||||||    
T  1513540 cagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaaatattgttctaaagtgaatggtgatgttcttgcctcatt 1513639  T
Q  111 gatattttcaaggccatc 128  Q
    ||||||||||||||||||    
T  1513640 gatattttcaaggccatc 1513657  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 1489497 - 1489614
Alignment:
Q  12 cagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcatt 110  Q
    |||||| |||||||||||||||| ||||||  ||| ||||||||||||||||| ||||||||   |||  ||||||||||  ||||||||||||||||||    
T  1489497 cagagaagggagtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttgaaaatgtgtggtcaagtgcatgatgatgttcttgcctcatt 1489596  T
Q  111 gatattttcaaggccatc 128  Q
    ||||||||||||||||||    
T  1489597 gatattttcaaggccatc 1489614  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 1534127 - 1534249
Alignment:
Q  12 cagagatgggagtgaagcatgtggtaga-aagtgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcatt 110  Q
    |||||| |||||| |||||||||||||| || ||  ||||||||  |||||||||||||| |||||||  | | ||| |  |||||||||||||||||||    
T  1534127 cagagaagggagttaagcatgtggtagagaactgtgcacaactacaagagatcgatttgatatattgttgtaatgtgaaaagtgatgttcttgcctcatt 1534226  T
Q  111 gatattttcaaggccatcattga 133  Q
    |||||| ||||||||||||||||    
T  1534227 gatattgtcaaggccatcattga 1534249  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 1537910 - 1538020
Alignment:
Q  19 gggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcattgatattt 117  Q
    |||||||||| ||||| ||||||  ||||| ||||||||||||||| ||||||||   ||| |||||||| ||  |||||||||| ||||||||||||||    
T  1537910 gggagtgaagtatgtgctagaaaaatgcactcaactaagagagatcaatttgaaaaggtgtgttcaagtggatgatgatgttcttacctcattgatattt 1538009  T
Q  118 tcaaggccatc 128  Q
    |||||||||||    
T  1538010 tcaaggccatc 1538020  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 1552944 - 1553045
Alignment:
Q  49 caactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcattgatattttcaaggccatcattgagagaaataacagctc 148  Q
    ||||||||||||||| ||||||||  ||||||| ||||| ||  ||||||| |||| |||||| ||||||||||||||||||||||| | ||||| ||||    
T  1552944 caactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaagataactgctc 1553043  T
Q  149 ca 150  Q
    ||    
T  1553044 ca 1553045  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 55505241 - 55505389
Alignment:
Q  12 cagagatgggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcatt 110  Q
    |||||| ||||||||| || ||| ||||||  ||||||||||||||||||||| | |||||   ||||  | ||||||||  |  |||| ||| |||| |    
T  55505241 cagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgactcaat 55505340  T
Q  111 gatattttcaaggccatcattgagagaaataacagctccacctggtttt 159  Q
    | ||||||||||||||||||||||| | |||||||| ||||||||||||    
T  55505341 ggtattttcaaggccatcattgagaaagataacagcgccacctggtttt 55505389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 1517716 - 1517757
Alignment:
Q  92 gtgatgttcttgcctcattgatattttcaaggccatcattga 133  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  1517716 gtgatgttcttgtctcattgatattgtcaaggccatcattga 1517757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 553434 - 553290
Alignment:
Q  20 ggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcattgatatttt 118  Q
    |||||||| |||||||||||||  ||||||||||| |||||||||||||||     ||||  | ||||||||    ||||| |||||||| || ||  ||    
T  553434 ggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttggggggttgtgataaagtgcatgcaaatgttgttgcctcaatggtacatt 553335  T
Q  119 caaggccatcattgagagaaataacagctccacctggttttgatt 163  Q
    || || ||||||||||| | |||  ||||||||||||||||||||    
T  553334 cacggacatcattgagaaagataggagctccacctggttttgatt 553290  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 640776 - 640726
Alignment:
Q  113 tattttcaaggccatcattgagagaaataacagctccacctggttttgatt 163  Q
    ||||||||||||||||||||||| | |||  | ||||||||||||||||||    
T  640776 tattttcaaggccatcattgagaaagatagtaactccacctggttttgatt 640726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 6006188 - 6006142
Alignment:
Q  113 tattttcaaggccatcattgagagaaataacagctccacctggtttt 159  Q
    ||||| ||||||||||||||||| | ||||| |||||||||||||||    
T  6006188 tatttacaaggccatcattgagaaagataactgctccacctggtttt 6006142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 1496136 - 1496177
Alignment:
Q  92 gtgatgttcttgcctcattgatattttcaaggccatcattga 133  Q
    |||||||||||| |||||||||||| ||||||||||| ||||    
T  1496136 gtgatgttcttgtctcattgatattgtcaaggccatcgttga 1496177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 644786 - 644734
Alignment:
Q  20 ggagtgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaa 71  Q
    |||||||| |||||||| ||||  ||||||||||| |||||||||||||||||    
T  644786 ggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaa 644734  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 44575643 - 44575755
Alignment:
Q  24 tgaagcatgtggtagaaag-tgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcattgatattttcaag 122  Q
    |||| |||||||||||||  ||||||||||  |||||| || |||||| | |||||  | | |||||| |||||||||||||||| |||||| |||||||    
T  44575643 tgaatcatgtggtagaaaactgcacacaaccgagagagctcaatttgagaaattgtgataatgtgcatcgtgatgttcttgcctcgttgatactttcaag 44575742  T
Q  123 gccatcattgaga 135  Q
    |||||||||||||    
T  44575743 gccatcattgaga 44575755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 28935004 - 28934933
Alignment:
Q  20 ggagtgaagcatgtggtagaaagt-gcacacaactaagagagatcgatttgaaatattgtcttcaagtgcat 90  Q
    |||||||||||||||||||||| | |||||||||||||||||||| ||||| |  ||||| || ||||||||    
T  28935004 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcat 28934933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 32151162 - 32151112
Alignment:
Q  113 tattttcaaggccatcattgagagaaataacagctccacctggttttgatt 163  Q
    ||||||||||||||||||||||| | ||||| ||||||||| ||| |||||    
T  32151162 tattttcaaggccatcattgagaaagataactgctccacctcgttatgatt 32151112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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