View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11921_low_11 (Length: 422)
Name: NF11921_low_11
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_11 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 208 - 405
Target Start/End: Complemental strand, 39408319 - 39408123
Alignment:
| Q |
208 |
gtatatttgtttgaatttattctttttaatattttgtctaaatctacttgtgctgtgcatttgcctcnnnnnnnnnnnnnnnnagaggaacctaaccaaa |
307 |
Q |
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| T |
39408319 |
gtatatttgtttgaatgtattctttttaatattttgtctaaatctacttgtgctgtgcatttgcctcttttttgttttgttttagaggaacctaaccaaa |
39408220 |
T |
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| Q |
308 |
aattcagacattagaaaatcgaaaattcaaagagctacatctaacatatcaaatcaaatagtatataatgtgatccaattaatttatgttcaccaaat |
405 |
Q |
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| T |
39408219 |
aattcagacattagaaaatcgaaaattcaaagagctacatctaacatatcaaatcaaata-tatataatgtgatccaattattttatgttcaccaaat |
39408123 |
T |
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Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 39408419 - 39408352
Alignment:
| Q |
108 |
gtgagagcctatcctaaacatttaatttcaacctctggttctttgatgaatggtcacgactccatttg |
175 |
Q |
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| T |
39408419 |
gtgagagcctatcctaaacatttaatttcaacctctggttctttgatgaatggccacgactccatttg |
39408352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 31392 - 31459
Alignment:
| Q |
108 |
gtgagagcctatcctaaacatttaatttcaacctctggttctttgatgaatggtcacgactccatttg |
175 |
Q |
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| T |
31392 |
gtgagagcctatcctaaacatttaatttcaacctctggttctttgatgaatggccacgactccatttg |
31459 |
T |
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