View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11921_low_13 (Length: 394)
Name: NF11921_low_13
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 32789742 - 32790117
Alignment:
| Q |
8 |
caatggatggagaatcaatagaaagaaatgaaaagnnnnnnnn--gttttatttaaagaatgaaaataggag---actctcctctaatggtatccctttc |
102 |
Q |
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| T |
32789742 |
caatggatggagaatcaatagaaagaaatgaaaagaaaaaaaaaagttttatttaaagaatgaaaataggaggagactctcctctaatggtatccctttc |
32789841 |
T |
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| Q |
103 |
acaaagggctgctactttatccattcaaaatacaacaaacaaatgtaccagatccctcg-tcatccttatttatcctatttatattttatacacgatacc |
201 |
Q |
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| T |
32789842 |
acaaagggctgctactttatccattcaaaatacaacaaacaaatgtaccagatccctcgctcatccttatttatcctatttatgttttatacacgatatc |
32789941 |
T |
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| Q |
202 |
ctctcaaactacttaacttctcttactagcttcccttctaagttctaactacttaacttctctcattaactaaataactataatggtagatcttaacaat |
301 |
Q |
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| T |
32789942 |
ctctcaaactactaaacttctcttactagcttcccttctaagttctaactacttaacttctctcattaactaaataactataatggtagatcttaacaat |
32790041 |
T |
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| Q |
302 |
tcccacgcataatctccacgccatgtttctgctaaagtttccttcagaatcagctggtccctggtaagattatcat |
377 |
Q |
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| T |
32790042 |
tcccacgcataatctccacgccatgtttctgctaaagtttccttcagaatcagctggtccctggtaagattatcat |
32790117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 48283083 - 48283142
Alignment:
| Q |
310 |
ataatctccacgccatgtttctgctaaagtttccttcagaatcagctggtccctggtaag |
369 |
Q |
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| T |
48283083 |
ataatctcctcaccatgtttctgctaaaggttccttcaaaatcagctggtccctggtaag |
48283142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 48282975 - 48283032
Alignment:
| Q |
244 |
ttctaactacttaacttctctcattaactaaataactataatggtagatcttaacaat |
301 |
Q |
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| T |
48282975 |
ttctaactagttaacttatcttcttaactaaataactataaggatagatcctaacaat |
48283032 |
T |
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