View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11921_low_17 (Length: 349)
Name: NF11921_low_17
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_17 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 38300922 - 38301234
Alignment:
| Q |
19 |
aaccccattgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38300922 |
aaccccattgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttactgaaactgggaaatctgaacttgatgttt |
38301021 |
T |
|
| Q |
119 |
acttagatgagtcaaatttggattttcgttgtgatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38301022 |
acttagatgagtcaaatttggattttcgttgtgatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatatt |
38301121 |
T |
|
| Q |
219 |
ggcttgcgacttgttaagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38301122 |
ggcttgcgacttgttaagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcacgcgtctttaacaagtataaagatcgtatgttg |
38301221 |
T |
|
| Q |
319 |
ccgatgaatgtgg |
331 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38301222 |
ccgatgaatgtgg |
38301234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 38309564 - 38309865
Alignment:
| Q |
19 |
aaccccattgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgttt |
118 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| | |||||||||| |||||||| |||||| |||||||||||| |
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|
| T |
38309564 |
aacctcattgctttccttttcacgtgtgagatataataggaattgaaagtgcaccaacggcagcttgttactgaaactgaaaaatctcaacttgatgttt |
38309663 |
T |
|
| Q |
119 |
acttagatgagtcaaatttggattttcgttgtgatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |
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|
| T |
38309664 |
acttagatgagtcaaatttggattttcattgttatgaagatatggatgtattacagtggtggaagagaaataataatcgatttccggatctatcaattct |
38309763 |
T |
|
| Q |
219 |
ggcttgcgacttgttaagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttg |
318 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||||| | || |||||||| |||||||||||||||||| |
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|
| T |
38309764 |
ggcctgcgacttgttaagttttcccattaccactgtcgcatctgattttgagttttgcatgggctcacgtgtgtttaacaaatataaagatcgtatgttg |
38309863 |
T |
|
| Q |
319 |
cc |
320 |
Q |
| |
|
|| |
|
|
| T |
38309864 |
cc |
38309865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 38317575 - 38317887
Alignment:
| Q |
19 |
aaccccattgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgttt |
118 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| | |||||| |||||||||||| |
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|
| T |
38317575 |
aacctcattgctttccttttcacgtgtgaaatataataggaattgaaagtgcaccaacggcagcttgttactgaaactagaaaatctcaacttgatgttt |
38317674 |
T |
|
| Q |
119 |
acttagatgagtcaaatttggattttcgttgtgatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
38317675 |
acttagatgagtcaaatttggattttcattgttatgaagatatggatgtattacaatggtggaagagaaataataatcgatttccggatctatcaatatt |
38317774 |
T |
|
| Q |
219 |
ggcttgcgacttgttaagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttg |
318 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || ||||| |||| ||| ||||||||||| ||| | ||||||||||||||| ||||||||| | || |
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|
| T |
38317775 |
agcttgcgacttgttaagtgttcccattgccactgttgcttctgattctgaattttgcatgggttcacgtgtctttaacaagtatgaagatcgtacgctg |
38317874 |
T |
|
| Q |
319 |
ccgatgaatgtgg |
331 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
38317875 |
cccacgaatgtgg |
38317887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 331
Target Start/End: Original strand, 38306838 - 38307134
Alignment:
| Q |
35 |
ttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgtttacttagatgagtcaaa |
134 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| || | |||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||| | |
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|
| T |
38306838 |
ttttcacttgtgaaatacaataggaattgaaaatgaaacatcaacagcttgttaccgaaactgaaaagtctcaacttgatgtttacttagatgagtcaga |
38306937 |
T |
|
| Q |
135 |
tttggattttcgttgtgatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgtta |
234 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||| |
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|
| T |
38306938 |
tttgggttttctttgtaatgaagatatggatgtattacaatggtggaagagtaataatgatcgatatccagatctatcaatactggcttgtgacttgtta |
38307037 |
T |
|
| Q |
235 |
agtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtgg |
331 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38307038 |
agtgttcccattaccactgtggcttctgattttgaattttgcatgggctcacgcgtgtttaacaagtataaagatcgtatgttgccgatggatgtgg |
38307134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 25 - 331
Target Start/End: Original strand, 38314171 - 38314477
Alignment:
| Q |
25 |
attgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgtttacttag |
124 |
Q |
| |
|
||||||| | |||| || |||||||||||||| ||||||||| ||||||||||||||||||||| | ||||||| || |||||||||||||||||||| | |
|
|
| T |
38314171 |
attgctttctttttaacttgtgaaatataatatgaattgaaaatgcaccatcaacagcttgttactaaaactggaaagtctgaacttgatgtttactttg |
38314270 |
T |
|
| Q |
125 |
atgagtcaaatttggattttcgttgtgatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttg |
224 |
Q |
| |
|
| |||||| ||||| ||||| ||| | |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38314271 |
acgagtcagatttgaattttggttcttatgaagatatggatgtattacaatggtggaagagtaattcaaatcgatttccagatctatcaatattggcttg |
38314370 |
T |
|
| Q |
225 |
cgacttgttaagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatg |
324 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| |||||||| ||||||||||||||| | || || ||||||||||||||||| ||||| || ||| |
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|
| T |
38314371 |
cgacttgttaagtgttcccattgccacagtggcttctgattttgaattttgcatgggctcacgtgtgttaaacaagtataaagatcgcatgttaccaatg |
38314470 |
T |
|
| Q |
325 |
aatgtgg |
331 |
Q |
| |
|
|||||| |
|
|
| T |
38314471 |
gatgtgg |
38314477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 33 - 327
Target Start/End: Original strand, 38321684 - 38321972
Alignment:
| Q |
33 |
ccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgtttacttagatgagtca |
132 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||| | |||||||||| |||| ||||| |||||||| ||||||||| ||||||| |
|
|
| T |
38321684 |
ccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgtta------ctggaaaatcccaacttgatatttacttagctgagtca |
38321777 |
T |
|
| Q |
133 |
aatttggattttcgttgtgatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgt |
232 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
38321778 |
aatttggattttcgttgttatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcgagacttgt |
38321877 |
T |
|
| Q |
233 |
taagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaat |
327 |
Q |
| |
|
||||||||||| ||| ||| ||||||| ||||| || |||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38321878 |
taagtgttcccgttaacactatcgcttctgatttggatttttgcataggcttgcacgtttttaacaagtataaagatcgtatgttaccgatgaat |
38321972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 26 - 331
Target Start/End: Original strand, 38326389 - 38326688
Alignment:
| Q |
26 |
ttgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgtttacttaga |
125 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||||| |||| || ||| |||||||||||||||| || |
|
|
| T |
38326389 |
ttgctttccttttcacttgtgaaatgtaataggaattgaaaatgcaccatcaacaacttgtta------ctggaaagtctcaacttgatgtttacttgga |
38326482 |
T |
|
| Q |
126 |
tgagtcaaatttggattttcgttgtgatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgc |
225 |
Q |
| |
|
||| |||| |||||||||||||||| ||||||| |||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||| |||||||| |
|
|
| T |
38326483 |
tgaatcaagtttggattttcgttgttatgaagacatggatgtattagaatggtggaagagtaattataattgatttccagatctatcaattttggcttgt |
38326582 |
T |
|
| Q |
226 |
gacttgttaagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatga |
325 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| || ||||| || ||||||||||| || |||| ||| | ||||||||||| | |||| |||| |||| |
|
|
| T |
38326583 |
gacttgttaagtgttcccattgccactgtcgcatctgatttggaattttgcatgggtgcacgcgtatttgaaaagtataaagaccttatgctgcctatga |
38326682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 331
Target Start/End: Complemental strand, 38849756 - 38849449
Alignment:
| Q |
24 |
cattgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgtttactta |
123 |
Q |
| |
|
||||| || ||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| || ||| ||||||||||||||||| |
|
|
| T |
38849756 |
cattggtttccttttcacttgtgaaatgtaataggaattgaaagtgcaccatcagcagcttgttaccaaaactggaaagtctcaacttgatgtttactta |
38849657 |
T |
|
| Q |
124 |
gatgagtcaaatttggattttcgttgtgatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggctt |
223 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| | |
|
|
| T |
38849656 |
gatgagtcagttttggattttcgttgttatgcagaaatggatgtattacaatggtggaagagtaataatgatcgatttccggatctatcaatattggcct |
38849557 |
T |
|
| Q |
224 |
gcgacttgttaagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgat |
323 |
Q |
| |
|
||||||||||||||||||||||| || | || ||||| |||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38849556 |
gcgacttgttaagtgttcccattgccgctgtagcttctgattctgaattttgcatgggctcacgtgtctttaacaagtataaagatcgtatgttgccgat |
38849457 |
T |
|
| Q |
324 |
gaatgtgg |
331 |
Q |
| |
|
|||||||| |
|
|
| T |
38849456 |
gaatgtgg |
38849449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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