View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11921_low_18 (Length: 336)
Name: NF11921_low_18
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 139 - 308
Target Start/End: Original strand, 39720268 - 39720437
Alignment:
| Q |
139 |
ctgacagcaccgcattcccccaatcattgtggacatcttccataagttcaaaattttccaaacccaagctaagttccatgtttagtttgtaacctagacc |
238 |
Q |
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| T |
39720268 |
ctgacagcaccgtattcccccaatcattgtgaacatcttccataagttcaaaattttccaaacccaagctaagttccatgtttagtttgtaacctagacc |
39720367 |
T |
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| Q |
239 |
ctcacgcgtatcaccaacaagctgatccgctgcactcctcgttcctcagcctctgccgcgaaacggtatt |
308 |
Q |
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| T |
39720368 |
ctcacgcgtatcaccaacaagctgatccgctgcactcctcgttccacagcctctgccgcgaaacggtatt |
39720437 |
T |
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Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 39719166 - 39719245
Alignment:
| Q |
67 |
gtttgtcaccatatttaccagtggtcacaatcggtgcaattgatttcatggctgctgttataacttgacggtctgacagc |
146 |
Q |
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| T |
39719166 |
gtttgtcaccatatttaccggtggtcacaatcggtgcaattgatttcatggctgctgttataacttgacggtctgacagc |
39719245 |
T |
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