View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11921_low_21 (Length: 316)
Name: NF11921_low_21
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_21 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 316
Target Start/End: Complemental strand, 36158382 - 36158095
Alignment:
| Q |
14 |
agatggaaaatgcataaacctaattttaccattttctgaaattcaatttccagataggagaatatatagaggcagtgaggatcaaacttttgaccttttg |
113 |
Q |
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| T |
36158382 |
agatggaaaatgcataaac---attttaccattttctgaaattcaatttccagataggagaata----gaggcagtgaggatcaaacttttgacc----- |
36158295 |
T |
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| Q |
114 |
atcatagatatggataataaataaaatctaactgtgagaataagcttgaaagtagaatttgtttttctttatacccttatacctcccaatgccaaaagac |
213 |
Q |
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| T |
36158294 |
---atagatatggataataaataaaatctaacagtgagaataagcttgaaagtataatttgtttttctttatatccttatacctcccaatgccaaaagac |
36158198 |
T |
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| Q |
214 |
cctgctcactctataacccctcctccctatttataggtgacatgcttttatttatttcatctaacagtaacaaacctatcatgtacacatttccatatac |
313 |
Q |
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| T |
36158197 |
cctgctcactctataacccctcctccctatttataggtgacatgcttttatttatttcatctaacagtaacaaacctatcatgtacacatttccatatac |
36158098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 36153446 - 36153346
Alignment:
| Q |
16 |
atggaaaatgcataaacctaattttaccattttctgaaattcaatttccagataggagaatatatagaggcagtgaggatcaaacttttgaccttttgat |
115 |
Q |
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| T |
36153446 |
atggacaatgcataaacctaattttatcattttctgaaattcaattt-cagttaggaga----atagaggcagtaaggatcaaactttagacctcttgat |
36153352 |
T |
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| Q |
116 |
cataga |
121 |
Q |
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| T |
36153351 |
cataga |
36153346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 36153247 - 36153201
Alignment:
| Q |
149 |
gagaataagcttgaaagtagaatttgtttttctttatacccttatac |
195 |
Q |
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| T |
36153247 |
gagaataagcttgaaagtataatttgtctttctttatacccttatac |
36153201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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