View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11921_low_25 (Length: 272)
Name: NF11921_low_25
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 31827518 - 31827277
Alignment:
| Q |
18 |
aacatcacaatgtaagatactacaaattctcaaccaccacgaaacgcaaaacccaatgctacaaaaaa-tcatattnnnnnnntta-ttaatggattcct |
115 |
Q |
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| T |
31827518 |
aacatcacaatgtaagatactacaaattctcaaccaccacgaaacgcaaaacccaatgctacaaaaaaatcatattaaaaaaattaattaatggattcct |
31827419 |
T |
|
| Q |
116 |
taatcccacaaccttgtgaacatgcagtgaacctaaacgactaaattgaaaatgtaaatacctccatttaaccatggatctgtccaaaaggacgtgtttt |
215 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31827418 |
caatcccacaacctcgtgaacatgcagtgaacctaaacgactaaattgaaaatgtaaatacctccatttaaccatggatctgtccaaaaggacgtgtttt |
31827319 |
T |
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| Q |
216 |
ctccattaccaaccttgggcacacaccccgtccacgaaccac |
257 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
31827318 |
ctccattaccaaccttgggcacacacaccgtccatgaaccac |
31827277 |
T |
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