View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11921_low_3 (Length: 652)
Name: NF11921_low_3
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 277 - 652
Target Start/End: Complemental strand, 43843082 - 43842707
Alignment:
| Q |
277 |
catacaatggttcgagtagatgtggatggtggtggatctgcaaccccttcttcttgtgagcttttcttattgctgcttgaagaataataatgatctttta |
376 |
Q |
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| T |
43843082 |
catacaatggtttgagtagatgtggatggtggtggatctgcaaccccttcttcttgtgagcttttcttattgctgcttgaagaataataacgatctttta |
43842983 |
T |
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| Q |
377 |
gggctacattagaatcagatgcacatgcacatgcatgaggtttgagtagtgatgttgatgaatcttcttcttctttggtttgggtggactcaataccaaa |
476 |
Q |
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| T |
43842982 |
gggctacattagaatcagatgcacatgcacatgcatgaggtttgagtagtgatgttgatgaatcttcttcttctttggtttgcgtggactcaataccaaa |
43842883 |
T |
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| Q |
477 |
acacctcaaaaaagtcttgaaaatttcttcaagacaatagcatggatggtaaacatagaaagccattgttttctcttctttcttagttgataatctctcc |
576 |
Q |
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| T |
43842882 |
acacctcaaaaaagtcttgaaaatttcttcaagacaatagcatggatggtaaacatagaaagtcattgttttctcttctttcttagttgataatctctcc |
43842783 |
T |
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| Q |
577 |
gtagtttcttccatgtgtttcacaattaatctcttgtgcttgattttgctaaattttagtgattgtctctgctcct |
652 |
Q |
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| T |
43842782 |
gtagtttcttccatgtgtttcacaattaatctcttgtgcttgattttgctaaattttagtgattgtttctgttcct |
43842707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 43843357 - 43843123
Alignment:
| Q |
1 |
actaattaataaataattaagaaatgcaaaattttgatataaaacgagttaaagtaatggggtttgagatttgagaagtagttgaagcttactcgcatgt |
100 |
Q |
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| T |
43843357 |
actaattaataaataattaagaaatgcaaaattttgatataaaacgagttaaagtaatggggtttgagatttgagaagtagttgaagcttactcgcatgt |
43843258 |
T |
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| Q |
101 |
tattaattatgttgaggtggtggaccttgtgtaagtggagtccttcgaggaccaccccttcccattgaacttagattctgcacacaatatactcaattgt |
200 |
Q |
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| T |
43843257 |
tattaattatgttgaggtggtggaccttgtgtaagtggagtccttcgaggaccaccccttcccattgaacttagattctgcacacaatatactcaattgt |
43843158 |
T |
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| Q |
201 |
ttgaggaaattaaatggtgttcgtactttggttgg |
235 |
Q |
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| T |
43843157 |
ttgaggaaattaaatggtgttcgtactttggttgg |
43843123 |
T |
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