View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11921_low_33 (Length: 229)
Name: NF11921_low_33
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 29306501 - 29306374
Alignment:
| Q |
70 |
tttttaaaaataaactaatgatcataacacaaacctcaactgaagaataattcacgg--caagggaaaaattgactatatgat-aaatatgtgtcataat |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| || |||||||||||||||| |
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| T |
29306501 |
tttttaaaaataaactaatgatcataacacaaacctcaactgaagaataattcatggtataagggaaaaatttactatataataaaatatgtgtcataat |
29306402 |
T |
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| Q |
167 |
tacacatcaaatgcaagaatctaacaaa |
194 |
Q |
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| T |
29306401 |
tacacatcaaatgcaagaatctaacaaa |
29306374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 29297736 - 29297627
Alignment:
| Q |
75 |
aaaaataaactaatgatcataacacaaacctcaactgaagaataattcacggcaagggaaaaattgactatatgat-aaatatgtgtcataattacacat |
173 |
Q |
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|||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||||||| |
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| T |
29297736 |
aaaattaaactaatgagcataacacaaaccttaactgaagaataattcatggcaagggaaaaattgactatataataaaatatgtgtcacaattacacat |
29297637 |
T |
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| Q |
174 |
caaatgcaag |
183 |
Q |
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|||||||||| |
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| T |
29297636 |
caaatgcaag |
29297627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 29306227 - 29306188
Alignment:
| Q |
190 |
acaaaattgattaaaagtatacaagaaaagaagatgaatc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
29306227 |
acaaaattgattaaaagtatacaagaaaagaagatgaatc |
29306188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 29297482 - 29297443
Alignment:
| Q |
190 |
acaaaattgattaaaagtatacaagaaaagaagatgaatc |
229 |
Q |
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| T |
29297482 |
acaaaattgattaaaagtatacaagaaaagaagttgaatc |
29297443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 29297981 - 29297939
Alignment:
| Q |
9 |
tttttctggataatttgaaaattctgcatgaagcatgctttgt |
51 |
Q |
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||||| ||||||| ||||||| ||||||||||||||||||||| |
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| T |
29297981 |
tttttttggataagttgaaaactctgcatgaagcatgctttgt |
29297939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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