View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11921_low_37 (Length: 208)
Name: NF11921_low_37
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 38986052 - 38986227
Alignment:
| Q |
15 |
caaaggggtcatgcgtaatttttcgtaacaaattataacacataactaggattctctaagattggatagtcataatattagacacgtattaagagatagt |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38986052 |
caaaagggtcatgcgtaatttttcgtaacaaattataacacataactaggattctctaagattggatagtcataatattagacacgtattaagagatagt |
38986151 |
T |
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| Q |
115 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggagacgttgttgcatcagataatca |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38986152 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggagacgttgttgcatcagataatca |
38986227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 28513952 - 28514127
Alignment:
| Q |
15 |
caaaggggtcatgcgtaatttttcgtaacaaattataacacataactaggattctctaagattggatagtcataatattagacacgtattaagagatagt |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28513952 |
caaaagggtcatgcgtaatttttcgtaacaaattataacacataactaggattctctaagattggataatcataatattagacacgtattaagagatagt |
28514051 |
T |
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| Q |
115 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggagacgttgttgcatcagataatca |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28514052 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggatacgttgttgcatcagataatca |
28514127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 23422774 - 23422949
Alignment:
| Q |
15 |
caaaggggtcatgcgtaatttttcgtaacaaattataacacataactaggattctctaagattggatagtcataatattagacacgtattaagagatagt |
114 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23422774 |
caaaagggtcatgtgtaatttttcgtaacaaattataacacataactaggattctctaagattggatagtcataatattagacacgtattaagagatagt |
23422873 |
T |
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| Q |
115 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggagacgttgttgcatcagataatca |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23422874 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggagacgttgttgcatcagataatca |
23422949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 916308 - 916133
Alignment:
| Q |
15 |
caaaggggtcatgcgtaatttttcgtaacaaattataacacataactaggattctctaagattggatagtcataatattagacacgtattaagagatagt |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
916308 |
caaaagggtcatgcgtaatttttcgtaacaaattataacacataactaagattctctaagattggatagtcataatattagacacgtatcaagagatagt |
916209 |
T |
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| Q |
115 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggagacgttgttgcatcagataatca |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
916208 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggagacgttgttgcatcagataatca |
916133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 12434363 - 12434188
Alignment:
| Q |
15 |
caaaggggtcatgcgtaatttttcgtaacaaattataacacataactaggattctctaagattggatagtcataatattagacacgtattaagagatagt |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12434363 |
caaaagggtcatgcgtaatttttcgtaacaaattataacacataactaggattctctaagattggataatcataatattagacacgtattaagagatagt |
12434264 |
T |
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| Q |
115 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggagacgttgttgcatcagataatca |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12434263 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggatacgttgttgcatcagataatca |
12434188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 42405785 - 42405960
Alignment:
| Q |
15 |
caaaggggtcatgcgtaatttttcgtaacaaattataacacataactaggattctctaagattggatagtcataatattagacacgtattaagagatagt |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42405785 |
caaaagggtcatgcgtaatttttcgtaacaaattataacacataactaggattctctaagattggataatcataatattagacacgtattaagagatagt |
42405884 |
T |
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| Q |
115 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggagacgttgttgcatcagataatca |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42405885 |
cctagttagttataatacttagagcttatggaataagggactttaaatccggatacgttgttgcatcagataatca |
42405960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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