View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11921_low_38 (Length: 208)

Name: NF11921_low_38
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11921_low_38
NF11921_low_38
[»] chr6 (10 HSPs)
chr6 (1-206)||(2964390-2964595)
chr6 (1-208)||(2658983-2659190)
chr6 (1-206)||(2997380-2997585)
chr6 (1-205)||(2951833-2952025)
chr6 (1-208)||(2973901-2974093)
chr6 (1-205)||(3003770-3003962)
chr6 (1-205)||(2927051-2927243)
chr6 (1-206)||(2934489-2934685)
chr6 (150-206)||(2982762-2982818)
chr6 (1-69)||(2982881-2982949)
[»] scaffold0024 (2 HSPs)
scaffold0024 (152-208)||(35361-35417)
scaffold0024 (1-109)||(35234-35342)
[»] chr3 (3 HSPs)
chr3 (2-207)||(49613322-49613527)
chr3 (150-204)||(49618306-49618360)
chr3 (1-69)||(49618436-49618504)
[»] chr7 (1 HSPs)
chr7 (174-208)||(3339057-3339091)


Alignment Details
Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 2964595 - 2964390
Alignment:
Q  1 tatcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttattgaaaaaatcaaaatatttaatagtgagttta 100  Q
    ||||||||||||||||||||| |||  ||||| |||||||   ||||||||| ||| ||||||||||||| || |||||||||| | | |||||||||||    
T  2964595 tatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaataatcaaaataatcagtagtgagttta 2964496  T
Q  101 agaaaagaaggaatgatagtgttaggaacactatcatttgcagaaccagatgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaa 200  Q
    ||||||||||| ||| ||||||||||||||||| |||||| |||||   ||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  2964495 agaaaagaagggatgttagtgttaggaacactagcatttgtagaactcaatgaaagactgtaaattttttcaataacgaaatagggaagctgattttcaa 2964396  T
Q  201 gtaaca 206  Q
    ||||||    
T  2964395 gtaaca 2964390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 2658983 - 2659190
Alignment:
Q  1 tatcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttattgaaaaaatcaaaatatttaatagtgagttta 100  Q
    ||||||||||||||||||||| |||| ||||| |||||||  ||||||||||  ||  |||||||||||| || ||| |||||||||||||||||||| |    
T  2658983 tatcctaatcagatcagtgaagtgcattatactaatatcaccattatcaaaaaacaagtttgatttattggaagaataaaaatatttaatagtgagttca 2659082  T
Q  101 agaaaagaaggaatgatagtgttaggaacactatcatttgcagaaccagatgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaa 200  Q
    ||||||  ||| ||  |||| |||||||||||| |||||| |||||  ||||||||   |||||||| ||||||||||||||||||||||||||||||||    
T  2659083 agaaaaccagggatcgtagtcttaggaacactagcatttgtagaactcgatgaaagtttgtaaatttcttcaataacgaaaaagggaagctgattttcaa 2659182  T
Q  201 gtaacaat 208  Q
    ||||||||    
T  2659183 gtaacaat 2659190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 2997380 - 2997585
Alignment:
Q  1 tatcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttattgaaaaaatcaaaatatttaatagtgagttta 100  Q
    ||||||||||||||||||||| |||  ||||| |||||||  || |||||||  ||  ||||||||||||||| ||   ||| | ||||||||||||| |    
T  2997380 tatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagtttgatttattgaaagaaaagaaaaaattaatagtgagttca 2997479  T
Q  101 agaaaagaaggaatgatagtgttaggaacactatcatttgcagaaccagatgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaa 200  Q
    |||||| |||| || ||||||||||||  |||| |||||| |||||   ||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  2997480 agaaaacaagggatcatagtgttaggattactagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaa 2997579  T
Q  201 gtaaca 206  Q
    ||||||    
T  2997580 gtaaca 2997585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2952025 - 2951833
Alignment:
Q  1 tatcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttattgaaaaaatcaaaatatttaatagtgagttta 100  Q
    ||||||||||||||||||||| |||  ||||| |||||||   ||||||||| ||| ||||||||||||| || || ||||||| | |||||||||||||    
T  2952025 tatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagttta 2951926  T
Q  101 agaaaagaaggaatgatagtgttaggaacacta-tcatttgcagaaccagatgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttca 199  Q
    ||||||||| | || |||||| |||||||| || |||             ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2951925 agaaaagaatggatcatagtgataggaacattagtca-------------atgaaagactgtaaattttttcaataacgaaaaagggaagctgattttca 2951839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 2974093 - 2973901
Alignment:
Q  1 tatcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttattgaaaaaatcaaaatatttaatagtgagttta 100  Q
    |||||||||||||||| |||| |||| ||||| ||||||||| ||||||||||||| ||||| |||||||||| | | ||| ||   |||||||||||||    
T  2974093 tatcctaatcagatcattgaagtgcattatactaatatcattgttatcaaaacccaattttggtttattgaaacattgaaagtaagcaatagtgagttta 2973994  T
Q  101 agaaaagaaggaatgatagtgttaggaacactatcatttgcagaaccagatgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaa 200  Q
    ||||||||| | || |||||||||||||||   |||             |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  2973993 agaaaagaatggatcatagtgttaggaaca--gtca-------------atgaaatactgtaaattttttcaataacgaaaaagggaagctgattttcaa 2973909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 3003770 - 3003962
Alignment:
Q  1 tatcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttattgaaaaaatcaaaatatttaatagtgagttta 100  Q
    ||||||||||||||||||||| ||   ||||| |||||||   ||||||||| ||| ||||||||||||| || || ||||||| | |||||||||||||    
T  3003770 tatcctaatcagatcagtgaagtgacttatactaatatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagttta 3003869  T
Q  101 agaaaagaaggaatgatagtgttaggaacacta-tcatttgcagaaccagatgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttca 199  Q
    ||||||||| | || |||||| |||||||| || |||             ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3003870 agaaaagaatggatcatagtggtaggaacattagtca-------------atgaaagactgtaaattttttcaataacgaaaaagggaagctgattttca 3003956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2927243 - 2927051
Alignment:
Q  1 tatcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttattgaaaaaatcaaaatatttaatagtgagttta 100  Q
    ||||| ||||||||||||||| |||  ||||  |||||||   |||||||||  || ||||||||||||| || || ||||||| | |||||||||||||    
T  2927243 tatccgaatcagatcagtgaagtgccttataataatatcacccttatcaaaattcaattttgatttattgtaataaccaaaataatgaatagtgagttta 2927144  T
Q  101 agaaaagaaggaatgatagtgttaggaacacta-tcatttgcagaaccagatgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttca 199  Q
    ||||||||| | || |||||| |||||||| || |||             ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2927143 agaaaagaatggatcatagtggtaggaacattagtca-------------atgaaagactgtaaattttttcaataacgaaaaagggaagctgattttca 2927057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 2934685 - 2934489
Alignment:
Q  1 tatcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttattgaaaaaatcaaaatatttaatagtgagttta 100  Q
    ||||||||||||||||||||| |||  ||||| |||||||   ||||||||| ||| ||||||||||||| || || ||||||| | |||||||||| ||    
T  2934685 tatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtcta 2934586  T
Q  101 agaaaagaag---gaatgatagtgttaggaacacta-tcatttgcagaaccagatgaaagaccgtaaattttttcaataacgaaaaagggaagctgattt 196  Q
    |||||||||    | || |||||||| ||| || || |||             ||||||||| |||||||||||||||||||||||||||||||||||||    
T  2934585 agaaaagaatattgtatcatagtgttgggatcattagtca-------------atgaaagactgtaaattttttcaataacgaaaaagggaagctgattt 2934499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 2982818 - 2982762
Alignment:
Q  150 atgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 206  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2982818 atgaacgactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 2982762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2982949 - 2982881
Alignment:
Q  1 tatcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttatt 69  Q
    ||||||||||||||||||||| |||  ||||| |||||||  ||||||||||  || ||||||||||||    
T  2982949 tatcctaatcagatcagtgaagtgccttatactaatatcaccattatcaaaagacaattttgatttatt 2982881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 35361 - 35417
Alignment:
Q  152 gaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35361 gaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaat 35417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 35234 - 35342
Alignment:
Q  1 tatcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttattgaaaaaatcaaaatatttaatagtgagttta 100  Q
    ||||||||||||||||||||| |||  ||| ||   |  ||||||||||||| ||| |||||||| ||||||| | | |||||| ||||||||||||| |    
T  35234 tatcctaatcagatcagtgaagtgccttatgcactgactattattatcaaaaaccaattttgattgattgaaatattgaaaataattaatagtgagttca 35333  T
Q  101 agaaaagaa 109  Q
    |||||||||    
T  35334 agaaaagaa 35342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 49613527 - 49613322
Alignment:
Q  2 atcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttattgaaaaaatcaaaatatttaatagtgagtttaa 101  Q
    |||||||||||||||||||| |||  ||||| || |||   ||||||||||||||  ||||||| |||| || |  ||||||| | || | | |||| ||    
T  49613527 atcctaatcagatcagtgaagtgccttatactaaaatcgccattatcaaaacccaagtttgattgattgtaatatgcaaaataatcaaaactaagttcaa 49613428  T
Q  102 gaaaagaaggaatgatagtgttaggaacactatcatttgcagaaccagatgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaag 201  Q
    |||||||||| ||  |||| || ||||||||| | || | ||||  | ||||||||  |||||||| || |||||| ||||| || |  |||||||||||    
T  49613427 gaaaagaagggattttagtcttgggaacactagcgttagtagaagtaaatgaaagattgtaaatttcttgaataacaaaaaatggcaattgattttcaag 49613328  T
Q  202 taacaa 207  Q
    ||||||    
T  49613327 taacaa 49613322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 49618360 - 49618306
Alignment:
Q  150 atgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaa 204  Q
    ||||||||  |||||| ||||||||||||||| ||||||||||||||| ||||||    
T  49618360 atgaaagaatgtaaatattttcaataacgaaatagggaagctgattttgaagtaa 49618306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 49618504 - 49618436
Alignment:
Q  1 tatcctaatcagatcagtgaaatgcaatatacaaatatcattattatcaaaacccagttttgatttatt 69  Q
    ||||||||||||||||||||| |||  ||||| |||||||   | ||||||| ||| ||||||||||||    
T  49618504 tatcctaatcagatcagtgaagtgccttatactaatatcaccgtcatcaaaatccaattttgatttatt 49618436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 3339091 - 3339057
Alignment:
Q  174 taacgaaaaagggaagctgattttcaagtaacaat 208  Q
    |||||||||||||||||||||||||||||||||||    
T  3339091 taacgaaaaagggaagctgattttcaagtaacaat 3339057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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