View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11921_low_4 (Length: 637)

Name: NF11921_low_4
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11921_low_4
NF11921_low_4
[»] chr2 (3 HSPs)
chr2 (34-400)||(42898609-42898992)
chr2 (573-624)||(42898371-42898422)
chr2 (460-502)||(42898504-42898546)
[»] chr1 (3 HSPs)
chr1 (68-112)||(50786101-50786145)
chr1 (573-620)||(28496108-28496155)
chr1 (74-108)||(4160895-4160929)
[»] chr8 (2 HSPs)
chr8 (573-620)||(5788725-5788772)
chr8 (49-108)||(5787997-5788056)
[»] chr4 (1 HSPs)
chr4 (65-112)||(30517352-30517399)
[»] chr7 (1 HSPs)
chr7 (62-112)||(44150153-44150203)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 34 - 400
Target Start/End: Complemental strand, 42898992 - 42898609
Alignment:
Q  34 ttgaggaattacggttcttgaactctcctcagctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctgaaaatcatataatatataaac 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898992 ttgaggaattacggttcttgaactctcctcagctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctgaaaatcatataatatataaac 42898893  T
Q  134 aaacaaaca----caaatactgttactaaaatgctataacagtcaagaaatattcactgtcactcattctctcttttt-------------tagtctcac 216  Q
    |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||    
T  42898892 aaacaaacaaacacaaatactgttactaaaatgctataacagtcaagaaatattcactgtcactcattctctctttttcagtcattttttttagtctcac 42898793  T
Q  217 tctccttagacttgagagtaccaagtgcatgttgggataaatgtaaattttccggtgttagcgtgattttgttgaaactccgaagcataacttttgtcaa 316  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898792 tctccttagacttgagagtactaagtgcatgttgggataaatgtaaattttccggtgttagcgtgattttgttgaaactccgaagcataacttttgtcaa 42898693  T
Q  317 aaatattacaatgtgattctaaatgattctgataaattcaccatcaatctaagcatgcactaacaactagagagatagtacatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898692 aaatattacaatgtgattctaaatgattctgataaattcaccatcaatctaagcatgcactaacaactagagagatagtacatt 42898609  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 573 - 624
Target Start/End: Complemental strand, 42898422 - 42898371
Alignment:
Q  573 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggtt 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898422 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggtt 42898371  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 502
Target Start/End: Complemental strand, 42898546 - 42898504
Alignment:
Q  460 atctagctaggtacctgctcctatatcaatatatatcaatgta 502  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  42898546 atctagctaggtacctgctcctagatcaatatatatcaatgta 42898504  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 50786101 - 50786145
Alignment:
Q  68 aatgcatcacagaaggctctgtgagttatgaaactgtccctcctg 112  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  50786101 aatgcatcacagaaggctctgtgagttatgaaactgtctctcctg 50786145  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 573 - 620
Target Start/End: Original strand, 28496108 - 28496155
Alignment:
Q  573 ccttgagaagagggttccacagtcacatctgtattctcttgtgccaca 620  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  28496108 ccttgagaagagggtgccacagtcacatttgtattctcttgtaccaca 28496155  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 4160929 - 4160895
Alignment:
Q  74 tcacagaaggctctgtgagttatgaaactgtccct 108  Q
    |||||||||||||||||||| ||||||||||||||    
T  4160929 tcacagaaggctctgtgagtgatgaaactgtccct 4160895  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 573 - 620
Target Start/End: Original strand, 5788725 - 5788772
Alignment:
Q  573 ccttgagaagagggttccacagtcacatctgtattctcttgtgccaca 620  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  5788725 ccttgagaagagggttccacagtcacatctatattctctagtgccaca 5788772  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 5787997 - 5788056
Alignment:
Q  49 tcttgaactctcctcagctaatgcatcacagaaggctctgtgagttatgaaactgtccct 108  Q
    ||||| |||||| || |||||||||||||| || ||||| || |||||||||||||||||    
T  5787997 tcttgcactctcttctgctaatgcatcacaaaatgctctatgtgttatgaaactgtccct 5788056  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 30517352 - 30517399
Alignment:
Q  65 gctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctg 112  Q
    ||||| |||||||| |||||||||||||||||||| ||||| ||||||    
T  30517352 gctaaggcatcacaaaaggctctgtgagttatgaagctgtctctcctg 30517399  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 44150153 - 44150203
Alignment:
Q  62 tcagctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctg 112  Q
    |||| ||||||||||||||| |||||||| ||||| |||||||| ||||||    
T  44150153 tcagttaatgcatcacagaatgctctgtgggttataaaactgtctctcctg 44150203  T

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